Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 170 2e-36 seq12 95.1 1e-13 >seq9 Length=25348792 Score = 170 bits (188), Expect = 2e-36 Identities = 218/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| ||||| ||||||||||| || || || | ||||||| || || Sbjct 24571044 GAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGCGACCTGA 24570985 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || ||||| ||||||||||| ||| || || Sbjct 24570984 ACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCAGCAAAG 24570925 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || || ||| || ||||| ||||||| | | || |||||| |||| Sbjct 24570924 AAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCAGT-GACG 24570866 Query 869813 -GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || |||||| ||||||||||||||||||| ||||||||||| || ||||| Sbjct 24570865 AACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTCTTGTA 24570806 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 ||| ||||| | |||| |||| |||| || || | ||| || |||| ||||| Sbjct 24570805 CATTTCCCAGATTTGCGGGTATTGGATCGGAAACA-TACAGAACCGGTCTGGGTT 24570752 Score = 129 bits (142), Expect = 7e-24 Identities = 195/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| ||||| || ||||| ||||| || | ||| |||||||| | ||| Sbjct 24571329 TGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGCCCGGGCATCAACCCG 24571270 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| |||||||| || |||||||| || ||||| || || || ||||| ||| Sbjct 24571269 CGCTTCTTCAGCCAAAATATCGCGCAGAAGCTCCCCGAAAAGAAAATCCCCTCCACGCAA 24571210 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 || || | | | ||||| || || | ||| ||| || ||||||| | Sbjct 24571209 GCGAAAGCAACCAAACGCTCCGCGAACGATTCGGTGCC------GTCGATCCACCGGAGG 24571156 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| |||||||| || ||| | || || || |||||||| | || || ||| | Sbjct 24571155 GCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCATGGAAAAGCCGGTTC 24571096 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||| ||||||| |||| |||||| |||| || ||| Sbjct 24571095 TTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAG 24571058 >seq12 Length=19346091 Score = 95.1 bits (104), Expect = 1e-13 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTTTGCGACG-TCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 ||||||| || || |||| | | || ||| |||| ||| | || | || || | || Sbjct 2162923 TGGGACACCGACTTC-GCGAAGGTGGACCAGGCCACACTCGTCGACCTCATTCTGTCTGC 2162865 Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 |||||| | |||||||| ||||| || || |||| | |||| || ||||||| Sbjct 2162864 AAACTACTTGAACATCAAGAGCCTGCTGGACCTCACGTGCCAAGCTGTTGCAGACATGAT 2162805 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||| ||||| ||||| |||||||| | ||| |||||||||||| Sbjct 2162804 CAAGGGAAAGTCCCCCGAAGAGATCCGAATGACTTTTAACATCAAG 2162759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106746192233113