Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq1 84.2 2e-11 >seq3 Length=26737297 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| ||||| || || || || || || | || |||| | Sbjct 2107043 AATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACACTTGAGGTGGAGAGTTC 2107102 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || |||||| ||||| || || | || ||||| Sbjct 2107103 TGATACCATAGATAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGATCA 2107162 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| | ||| || || ||||||||||||| |||||| | || || ||||| Sbjct 2107163 GCAGAGACTTATATTTGCTGGAAAGCAGCTGGAGGATGGTAGAACACTAGCTGACTACAA 2107222 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 || ||||| |||||||| ||||| Sbjct 2107223 TATCCAAAAGGAATCTACTTTGCA 2107246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| |||||| | || ||||| || |||||| | || |||| | Sbjct 2106588 ATGCAAATATTTGTGAAAACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAGAGCTCC 2106647 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || ||||| ||||| || || | || || ||| Sbjct 2106648 GATACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCTGACCAA 2106707 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | || || |||||| ||||||||| || || | || || || ||| Sbjct 2106708 CAGAGACTTATATTCGCTGGAAAACAGTTGGAGGATGGTAGGACCCTTGCTGACTATAAC 2106767 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || || || || ||||| Sbjct 2106768 ATTCAGAAGGAGTCCACCTTGCA 2106790 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || | || || |||||||| ||| | || |||| | Sbjct 2106815 AATGCAGATTTTTGTTAAGACCCTGACTGGAAAAACCATCACCCTTGAGGTGGAGAGTTC 2106874 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||| |||||||| || | ||| ||||| Sbjct 2106875 TGATACAATTGACAATGTCAAGACTAAGATACAGGACAAAGAGGGTATTCCCCCTGATCA 2106934 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | || || || ||||||||||||| || || | || |||||||| Sbjct 2106935 GCAGAGGCTTATATTCGCTGGAAAGCAGCTGGAGGATGGTAGGACTCTTGCTGATTACAA 2106994 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || ||||| || ||||| | || |||| || | || |||| Sbjct 2106995 CATTCAGAAGGAATCCACTTTGCATCTTGTTCTAAGGTTGAGGGGTGGAA 2107044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || | || || |||||||| ||| | || |||| | Sbjct 2755639 AATGCAGATTTTTGTTAAGACCCTGACTGGAAAAACCATCACCCTTGAGGTGGAGAGTTC 2755580 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||| |||||||| || | ||| ||||| Sbjct 2755579 TGATACAATTGACAATGTCAAGACTAAGATACAGGACAAAGAGGGTATTCCCCCTGATCA 2755520 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | || || || ||||||||||||| || || | || |||||||| Sbjct 2755519 GCAGAGGCTTATATTCGCTGGAAAGCAGCTGGAGGATGGTAGGACTCTTGCTGATTACAA 2755460 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || ||||| || ||||| | || |||| || | || |||| Sbjct 2755459 CATTCAGAAGGAATCCACTTTGCATCTTGTTCTAAGGTTGAGGGGTGGAA 2755410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| |||||| | || ||||| || |||||| | || |||| | Sbjct 2755866 ATGCAAATATTTGTGAAAACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAGAGCTCC 2755807 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || ||||| ||||| || || | || || ||| Sbjct 2755806 GATACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCTGACCAA 2755747 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | || || |||||| ||||||||| ||| || | || || || ||| Sbjct 2755746 CAGAGACTTATATTCGCTGGAAAACAGTTGGAGGATGGCAGGACCCTTGCTGACTATAAC 2755687 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || || || || ||||| Sbjct 2755686 ATCCAGAAGGAGTCCACCTTGCA 2755664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| ||||| || || || || || || | || |||| | Sbjct 2755411 AATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACACTTGAGGTGGAGAGTTC 2755352 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || |||||| ||||| || || | || ||||| Sbjct 2755351 TGATACCATAGATAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGATCA 2755292 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| || || ||||||||||||| |||||| | || || ||||| Sbjct 2755291 GCAGAGGCTTATATTTGCTGGAAAGCAGCTGGAGGATGGTAGAACACTAGCTGACTACAA 2755232 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 || ||||| ||||| || ||||| Sbjct 2755231 TATCCAAAAGGAATCCACTTTGCA 2755208 >seq1 Length=42390363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | ||||| || ||||| ||| | || ||| | | Sbjct 34330276 ATGCAGATTTTTGTGAAGACTCTGACCGGGAAGACCATCACCTTGGAGGTTGAGAGTTCC 34330335 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | ||||| || ||| ||||| |||||| | || || || Sbjct 34330336 GACACCATTGACAATGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCTCCAGACCAG 34330395 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| || || || ||||| ||||||| || || |||||||||||||| Sbjct 34330396 CAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGGAGGACTCTGGCGGATTACAAC 34330455 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || || || || ||||| ||||| Sbjct 34330456 ATCCAGAAGGAGTCTACCCTGCAC 34330479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412817504112977