Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 154 2e-31 seq12 114 2e-19 >seq9 Length=25348792 Score = 154 bits (170), Expect = 2e-31 Identities = 233/328 (71%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||| ||||| || |||||| ||||| | |||| ||| |||||||| | ||||||| Sbjct 24571324 ACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGT-GAGCCCGGGCATCAACCCGCGCT 24571266 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| |||||||| || || ||||| || ||||| || || || ||||| ||| || | Sbjct 24571265 TCTTCAGCCAAAATATCGCGCAGAAGCTCCCCGAAAAGAAAATCCCCTCCACGCAAGCGA 24571206 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | || | ||||| || || | || ||| || ||||||| | |||| Sbjct 24571205 AAGCAACCAAACGCTCCGCGAACGATTCGGTGCCGTC------GATCCACCGGAGGGCCC 24571152 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| || ||| | || || || |||||||| | || || ||| ||||| Sbjct 24571151 ATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCATGGAAAAGCCGGTTCTTCT 24571092 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 |||||||||| |||| ||||| |||| | ||| || | || |||||||| || | Sbjct 24571091 CGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTATACATTTCGGAGTGGATATTCT 24571032 Query 794639 CGATGGCGATCTGGAAGCCATA-AAAGC 794665 | ||||| |||||||||||||| ||||| Sbjct 24571031 CTATGGCAATCTGGAAGCCATAGAAAGC 24571004 Score = 127 bits (140), Expect = 3e-23 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || || |||||||||||||| | ||||| || ||||| ||||||||| Sbjct 24570999 GCCTCTGCGACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCG 24570940 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| || || || ||||| || ||| || ||||| ||||||| | | || Sbjct 24570939 TCTGAGGCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGG 24570880 Query 796270 GAGACCCAGTG--GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 ||||||| || | | | | | |||||||||||||||||||||||| ||||||| Sbjct 24570879 TTTTCCCAGTGACGAACATC-CTGAGA-GAGGTCGACCTCCTCGGCGGTCCAGAAGGAGG 24570822 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||||| || |||||||| ||||| || | |||| |||| || |||| Sbjct 24570821 CCTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACA 24570771 >seq12 Length=19346091 Score = 114 bits (126), Expect = 2e-19 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||||||||| || || || || ||||||||| |||||| ||| ||| | | || Sbjct 11027182 ACTTGGTGACGGCCTTTGTGCCTTCAGAAACGGCGTGCTTGGCCAATTCACCGGGAAGGA 11027123 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || || ||||||||||||||||| | || | || ||| |||||| || | Sbjct 11027122 CCAATCGGACGGCGGTCTGGATCTCCCTGGAGGTAATGGTGGGCTTCTTGTTGTAACGAG 11027063 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 ||| | | ||||| ||| || | |||||||||| || |||||||| Sbjct 11027062 CCAATCTGGAAGCCTCCTGAGCGAGCTTCTCAAAGATGTCGTTGATGAAGCTGTTCATGA 11027003 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| | ||||| || | ||| ||||| ||||||||||| |||||| Sbjct 11027002 TCCCCATAGCCTTGCTCGAGATCCCGATGTCAGGGTGAACCTGCTTGAGAACCTTG 11026947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915736972227371