Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq1 100 2e-16 seq4 86.0 5e-12 >seq3 Length=26737297 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| ||||| || || || || || || | || |||| | Sbjct 2107043 AATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACACTTGAGGTGGAGAGTTC 2107102 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||||||| || || || || | || ||||| Sbjct 2107103 TGATACCATAGATAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGATCA 2107162 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| || || ||||||||||| | | |||| | || |||||||| Sbjct 2107163 GCAGAGACTTATATTTGCTGGAAAGCAGCTGGAGGATGGTAGAACACTAGCTGACTACAA 2107222 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 || |||||||| ||||| ||||| Sbjct 2107223 TATCCAAAAGGAATCTACTTTGCA 2107246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| ||||| || || || || || || | || |||| | Sbjct 2755411 AATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACACTTGAGGTGGAGAGTTC 2755352 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||||||| || || || || | || ||||| Sbjct 2755351 TGATACCATAGATAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGATCA 2755292 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||||||||| | | |||| | || |||||||| Sbjct 2755291 GCAGAGGCTTATATTTGCTGGAAAGCAGCTGGAGGATGGTAGAACACTAGCTGACTACAA 2755232 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 || |||||||| || || ||||| Sbjct 2755231 TATCCAAAAGGAATCCACTTTGCA 2755208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| |||||| | || ||||| || |||||| | || |||| ||| Sbjct 2106588 ATGCAAATATTTGTGAAAACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAGAGCTC- 2106646 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | | || || ||||| || || || || | || || || Sbjct 2106647 CGATACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCTGACCA 2106706 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||||| | || || |||||| ||||||| | | || | || ||||| || Sbjct 2106707 ACAGAGACTTATATTCGCTGGAAAACAGTTGGAGGATGGTAGGACCCTTGCTGACTATAA 2106766 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||| |||||||| || ||||| Sbjct 2106767 CATTCAGAAGGAGTCCACCTTGCA 2106790 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| |||||| | || ||||| || |||||| | || |||| ||| Sbjct 2755866 ATGCAAATATTTGTGAAAACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAGAGCTC- 2755808 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | | || || ||||| || || || || | || || || Sbjct 2755807 CGATACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCTGACCA 2755748 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||||| | || || |||||| ||||||| | || || | || ||||| || Sbjct 2755747 ACAGAGACTTATATTCGCTGGAAAACAGTTGGAGGATGGCAGGACCCTTGCTGACTATAA 2755688 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 ||| || |||||||| || ||||| Sbjct 2755687 CATCCAGAAGGAGTCCACCTTGCA 2755664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| || || | || || |||||||| ||| | || |||| | Sbjct 2106815 AATGCAGATTTTTGTTAAGACCCTGACTGGAAAAACCATCACCCTTGAGGTGGAGAGTTC 2106874 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||| || ||||| || | ||| ||||| Sbjct 2106875 TGATACAATTGACAATGTCAAGACTAAGATACAGGACAAAGAGGGTATTCCCCCTGATCA 2106934 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||||||||| | | || | || || ||||| Sbjct 2106935 GCAGAGGCTTATATTCGCTGGAAAGCAGCTGGAGGATGGTAGGACTCTTGCTGATTACAA 2106994 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| ||||| || || ||||| | || | || ||| | || |||| Sbjct 2106995 CATTCAGAAGGAATCCACTTTGCATCTTGTTCTAAGGTTGAGGGGTGGAA 2107044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| | || |||||||| ||||| | || |||| | Sbjct 2107500 ATGCAAATTTTTGTGAAAACTCTGACTGGCAAAACAATTACTCTTGAGGTGGAGAGTTCG 2107559 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || || || ||||| || | || |||||| Sbjct 2107560 GACACAATCGACAATGTGAAGGCGAAAATCCAAGACAAAGAGGGGATCCCTCCTGATCAG 2107619 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| || || || |||||||| | || |||| ||||| ||| Sbjct 2107620 CAGAGGCTTATTTTTGCCGGCAAGCAACTGGAGGATGGGCGCACTCTGGCCGACTATAAC 2107679 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||| ||| | ||| | ||| Sbjct 2107680 ATCCAAAAGGAGAGTACACTCCACCTTGTG 2107709 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| | || |||||||| ||||| | || |||| | Sbjct 2754954 ATGCAAATTTTTGTGAAAACTCTGACTGGCAAAACAATTACTCTTGAGGTGGAGAGTTCG 2754895 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || || || ||||| || | || |||||| Sbjct 2754894 GACACAATCGACAATGTGAAGGCGAAAATCCAAGACAAAGAGGGGATCCCTCCTGATCAG 2754835 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| || || || |||||||| | || |||| ||||| ||| Sbjct 2754834 CAGAGGCTTATTTTTGCCGGCAAGCAACTGGAGGATGGGCGCACTCTGGCTGACTATAAC 2754775 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||| ||| | ||| | ||| Sbjct 2754774 ATCCAAAAGGAGAGTACACTCCACCTTGTG 2754745 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| || || | || || |||||||| ||| | || |||| | Sbjct 2755639 AATGCAGATTTTTGTTAAGACCCTGACTGGAAAAACCATCACCCTTGAGGTGGAGAGTTC 2755580 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||| || ||||| || | ||| ||||| Sbjct 2755579 TGATACAATTGACAATGTCAAGACTAAGATACAGGACAAAGAGGGTATTCCCCCTGATCA 2755520 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||||||||| | | || | || || ||||| Sbjct 2755519 GCAGAGGCTTATATTCGCTGGAAAGCAGCTGGAGGATGGTAGGACTCTTGCTGATTACAA 2755460 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| ||||| || || ||||| | || | || ||| | || |||| Sbjct 2755459 CATTCAGAAGGAATCCACTTTGCATCTTGTTCTAAGGTTGAGGGGTGGAA 2755410 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||||||||| ||||| || || || ||||| || | || ||| ||| Sbjct 2107272 ATGCAAATTTTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 2107331 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| ||||| ||||| | || ||||| Sbjct 2107332 -GATACGATAGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGGATACCACCTGATCA 2107390 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| || || | || || |||| || || || Sbjct 2107391 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTCGATGATGGCAGGACTTTGGCAGATTATAA 2107450 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||| || || ||||| Sbjct 2107451 TATCCAGAAGGAATCAACTTTGCA 2107474 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||||||||| ||||| || || || ||||| || | || ||| ||| Sbjct 2755182 ATGCAAATTTTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 2755123 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| ||||| ||||| | || ||||| Sbjct 2755122 -GATACGATAGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGGATACCACCTGATCA 2755064 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| || || | || || |||| || || || Sbjct 2755063 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTCGATGATGGCAGGACTTTGGCAGATTATAA 2755004 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||| || || ||||| Sbjct 2755003 TATCCAGAAGGAATCAACTTTGCA 2754980 >seq1 Length=42390363 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| || || ||||| ||||| |||||||| || | || || ||| Sbjct 34330047 AATGCAGATTTTCGTTAAGACTTTGACAGGGAAAACCATCACTTTGGAGGTTGAAAGCTC 34330106 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || | | | | || || |||||| || || || || | ||| |||| Sbjct 34330107 G-GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGAATTCCCCCAGATC 34330165 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | || ||||| ||||| ||||| | | || | || ||||||| Sbjct 34330166 AGCAGAGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACA 34330225 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||| |||||||| || ||||| |||| ||||| |||| || || Sbjct 34330226 ACATTCAGAAGGAGTCGACCCTGCACTTGGTTCTGAGACTGCGTGGTGG 34330274 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || ||| | || || || ||||| ||| | || ||| | | Sbjct 34330276 ATGCAGATTTTTGTGAAGACTCTGACCGGGAAGACCATCACCTTGGAGGTTGAGAGTTCC 34330335 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | ||||| ||| ||| || || |||||| | || || ||| Sbjct 34330336 GACACCATTGACAATGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCTCCAGACCAG 34330395 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| || || || ||||| ||||| | | || ||||||| |||||| Sbjct 34330396 CAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGGAGGACTCTGGCGGATTACAAC 34330455 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || ||||||||||| ||||| Sbjct 34330456 ATCCAGAAGGAGTCTACCCTGCAC 34330479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| || | || || ||||||||||| | || || | Sbjct 34329591 AATGCAAATCTTTGTCAAGACCCTCACCGGAAAAACCATTACTCTGGAGGTCGAAAGTTC 34329650 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || |||||| || || || || | || ||| || Sbjct 34329651 CGACACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGACCA 34329710 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| ||||||| || || | || |||||||| Sbjct 34329711 GCAGAGGCTCATCTTCGCCGGAAAACAGCTTGAGGACGGCAGGACTCTTGCTGACTACAA 34329770 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||| || || | ||| ||||| Sbjct 34329771 CATCCAGAAGGAATCCACCCTCCACTTGGTG 34329801 >seq4 Length=30445767 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || ||||| | || ||||| ||||| ||| | || ||| | Sbjct 3595435 ATGCAAATTTTCGTGAAAACCCTTACGGGCAAGACCATAACCATAGAGGTTGAGTCGTCG 3595494 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || ||| ||||| || || ||||| | || ||||| Sbjct 3595495 GACACCATCGACAACGTGAAAGCGAAGATACAAGACAAGGAAGGAATTCCTCCTGATCAA 3595554 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || || |||||||||||||||| | || |||| |||||||| Sbjct 3595555 CAGCGACTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACTTTGGCCAACTACAAC 3595614 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 3595615 ATTCAGAAGGAGTCGAC 3595631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398853519181621