Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq861 84.2 8e-12 seq12 84.2 8e-12 seq34 80.6 1e-10 seq6 80.6 1e-10 seq4 80.6 1e-10 >seq861 Length=27709 Score = 84.2 bits (92), Expect = 8e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 13166 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 13225 Query 50170 CTGCTC 50175 |||||| Sbjct 13226 CTGCTC 13231 >seq12 Length=19346091 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| |||||||||||||| | ||| ||| ||||||||| |||||||||| | Sbjct 2521093 GTTGCGGAGATGGGATTTGAACCCGTGACCTTAAGGTTATGAGCCTTGCGAGCTACCAAG 2521034 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 2521033 CTGCTCTACCCCGC 2521020 >seq34 Length=344078 Score = 80.6 bits (88), Expect = 1e-10 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| |||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 26824 GTTGTGGAGATGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 26883 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 26884 CTGCTCTAC 26892 >seq6 Length=25259912 Score = 80.6 bits (88), Expect = 1e-10 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| |||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 6741156 GTTGTGGAGATGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 6741215 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 6741216 CTGCTCTAC 6741224 >seq4 Length=30445767 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||| | |||| ||| ||||||||| ||||||||| | Sbjct 17940932 GTTGCGGAGATGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTACGAGCTACCAAG 17940991 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 17940992 CTGCTCTACCCCGC 17941005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181592872339518