Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq627 105 2e-17 seq8 102 2e-16 >seq627 Length=50145 Score = 105 bits (116), Expect = 2e-17 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 |||||| ||||| || || ||| |||| || | ||||| ||||| ||||||||| || Sbjct 20649 TTAAAGCAAAAGAAGGCCGGATTAGAGGGAACTTGATGGGGAAACGAGTTGATTTTTCTG 20590 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 || ||| || || |||||||| || |||| || ||||||| ||||||||| | | Sbjct 20589 CACGAACAGTTATTACACCTGACCCTACCATTAACATTGATGAATTGGGAGTTCCA-TGG 20531 Query 305106 AA-ATTGCTTTAAAACTAACATTTCCAGAGAAAGT 305139 | ||||||||||| || |||| |||||||| ||| Sbjct 20530 AGTATTGCTTTAAATCTCACATATCCAGAGACAGT 20496 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| ||||||||||||||| Sbjct 20155 CATTTGAATGATGGGGACTTTGTCCTCTTCAATCGTCAACCTAGTCTGCATAAAATGTCT 20096 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| |||| | |||| | | || | ||| || || | ||| || || Sbjct 20095 ATTATGGGGCATAGAATCAAGATCATGCCTTATTCGACTTTCCGTCTGAATTTATCTGTC 20036 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | ||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||| || Sbjct 20035 ACTTCGCCTTACAATGCTGATTTCGATGGTGATGAAATGAACATGCATGTTCCTCAGTC 19977 >seq8 Length=23350829 Score = 102 bits (112), Expect = 2e-16 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 |||||| ||||| || || ||| |||| || | ||||| ||||| ||||||||| || Sbjct 6558616 TTAAAGCAAAAGAAGGCCGGATTAGAGGGAACTTGATGGGGAAACGAGTTGATTTTTCTG 6558675 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 || ||| || || |||||||| || |||| || ||||||| ||||| ||| | | Sbjct 6558676 CACGAACAGTTATTACACCTGACCCTACCATTAACATTGATGAATTGGGAGTACCA-TGG 6558734 Query 305106 AA-ATTGCTTTAAAACTAACATTTCCAGAGAAAGT 305139 | ||||||||||| || |||| |||||||| ||| Sbjct 6558735 AGTATTGCTTTAAATCTCACATATCCAGAGACAGT 6558769 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| ||||||||||||||| Sbjct 6559110 CATTTGAATGATGGGGACTTTGTCCTCTTCAATCGTCAACCTAGTCTGCATAAAATGTCT 6559169 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| |||| | |||| | | || | ||| || || | ||| || || Sbjct 6559170 ATTATGGGGCATAGAATCAAGATCATGCCTTATTCGACTTTCCGTCTGAATTTATCTGTC 6559229 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | ||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||| || Sbjct 6559230 ACTTCGCCTTACAATGCTGATTTCGATGGTGATGAAATGAACATGCATGTTCCTCAGTC 6559288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186739978279229