Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 seq38 98.7 7e-16 seq3 93.3 3e-14 seq9 84.2 1e-11 seq1 82.4 5e-11 >seq12 Length=19346091 Score = 100 bits (110), Expect = 2e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||| | || ||||| | || ||||| || || || ||||| Sbjct 17382504 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAA 17382445 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||||||| |||| | ||| || ||||| |||||| |||| |||| Sbjct 17382444 GATAAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGAATTTTAGCTTTC-ACAT 17382386 Query 33678 AGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733 ||| | ||| || ||| ||||| || | |||||||| || || || | || | Sbjct 17382385 TGTCAATGGTATCTGAGCT---CTCCACCTCCAAAGTGATCGTCTTCCCAGTCAGGGTCT 17382329 Query 33734 TTACAAAGATCTGCAT 33749 | |||||||||||||| Sbjct 17382328 TCACAAAGATCTGCAT 17382313 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || || || || || || |||||||||| Sbjct 17381721 ACCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGC 17381662 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | |||||||||||| || ||||| | ||||||||| | || Sbjct 17381661 AAGAGTCCGGCCGTCCTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGG 17381602 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | || | ||| | ||||||| || | Sbjct 17381601 AATACCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 17381543 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 17381542 CCTCCAAAGTAATAGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 17381494 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || || || || || || |||||||| | Sbjct 17398969 ACCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCTGC 17398910 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||||||| ||||| || || |||| ||||||||| || | || Sbjct 17398909 AAGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAGG 17398850 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || ||| | ||| | ||||||| || | Sbjct 17398849 AATACCTTCCTTGTCCTGGATCTTGGCCTT-AACGTTGTCGATGGTGTCGGAGCTCTCGA 17398791 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || ||||| |||| ||||| || ||||||||||| Sbjct 17398790 CCTCCAAAGTAATTGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 17398742 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 |||||||| | | ||| | || | || || || ||| || || ||||| |||||| Sbjct 17399883 TCACCACCACGAAGACGAAGGACTAGGTGGAGGGTCGACTCCTTCTGAATGTTATAATCG 17399824 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 | || ||||| | || ||||| || || || ||||| || | ||||||||||| | Sbjct 17399823 GCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGGCGCTGCTGATCCGGT 17399764 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-T 33697 || | ||| || ||||| ||| || |||| |||| ||| | ||| || | | | | Sbjct 17399763 GGAATACCCTCCTTGTCCTGAATCTTAGCTTTC-ACATTGTCAATGGTATC-CGAGCTCT 17399706 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || | || || || ||||||||||| Sbjct 17399705 CCACCTCCAGAGTGATCGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 17399654 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || || |||||||||| || || || |||| ||||||||| Sbjct 17382152 TGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTCCGACCGTCTTCCAATTGT 17382093 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||| || || |||| ||||||||| || | || | |||||| ||||| Sbjct 17382092 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTC 17382043 >seq38 Length=323574 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 |||||||| | | ||| | || | || || || ||| || || ||||||||||| Sbjct 34886 TCACCACCACGGAGACGAAGGACAAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCA 34827 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 | || ||||| | || ||||| || || || ||||| || | |||||||||||| | Sbjct 34826 GCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGACGCTGCTGATCCGGT 34767 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-T 33697 || | ||| || ||||| |||||| |||| |||| ||| | ||| || | | | | Sbjct 34766 GGAATACCCTCCTTGTCCTGAATTTTAGCTTTC-ACATTGTCAATGGTATC-CGAGCTCT 34709 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || | || || |||||||||||||| Sbjct 34708 CCACCTCCAAAGTGATCGTCTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 34657 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || || || || || ||||||||||||| Sbjct 33590 ACCACCACGCAGACGAAGGACCAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGC 33531 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | |||||||||||| || || | | ||||||||| | || Sbjct 33530 GAGAGTCCGGCCGTCCTCAAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGG 33471 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | || | ||| | ||||||| || | Sbjct 33470 AATACCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 33412 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 33411 CCTCCAGAGTAATAGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 33363 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || || || || || || |||||||||| Sbjct 52238 ACCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGC 52179 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | |||||| ||||| || ||||| | ||||||||| | || Sbjct 52178 AAGAGTCCGGCCGTCCTCGAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGATCCGGAGG 52119 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || ||| | ||| | ||||||| || | Sbjct 52118 AATACCTTCCTTGTCCTGGATCTTGGCCTT-AACGTTGTCGATGGTGTCGGAGCTCTCGA 52060 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 52059 CCTCCAAAGTAATTGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 52011 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||| | || ||||| | || ||||| || || || ||||| Sbjct 53114 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAA 53055 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | ||| || ||||| ||| || |||| |||| Sbjct 53054 GATGAGGCGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTC-ACAT 52996 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | ||| || | | | ||||| || | |||||||| || || || | || || Sbjct 52995 TGTCAATGGTATC-CGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCAGTCAGGGTCTTC 52937 Query 33736 ACAAAGATCTGCAT 33749 || ||||||||||| Sbjct 52936 ACGAAGATCTGCAT 52923 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || || |||||||||| || || || |||| ||||||||| Sbjct 34403 TGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTCCGACCGTCTTCCAATTGT 34344 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||| || || |||| ||||||||| || | || | |||||| ||||| Sbjct 34343 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTC 34294 >seq3 Length=26737297 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 33520 TCACCACCTCT-CAAA--CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAA 33576 |||||||||| | || || | ||| | || || || ||||| ||||| ||||| || Sbjct 2107732 TCACCACCTCCACGAAGGCGGAGCACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAG 2107673 Query 33577 TCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 |||| || ||||| | || |||| ||| || ||||||||||| | | ||||||||| Sbjct 2107672 TCGGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCA 2107613 Query 33637 TGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA 33695 | || | || |||||||| |||||| ||| |||| ||| | ||||| Sbjct 2107612 GGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTC-ACATTGTCGATTGTGTCCGAACT 2107554 Query 33696 TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| |||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 2107553 CTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCACAAAAATTTGCAT 2107500 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 33520 TCACCACCTCT-CAAA--CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAA 33576 |||||||||| | || || | ||| | || || || ||||| ||||| ||||| || Sbjct 2754722 TCACCACCTCCACGAAGGCGGAGCACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAG 2754781 Query 33577 TCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 || | || ||||| | || |||| ||| || ||||||||||| | | ||||||||| Sbjct 2754782 TCAGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCA 2754841 Query 33637 TGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA 33695 | || | || |||||||| |||||| ||| |||| ||| | ||||| Sbjct 2754842 GGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTC-ACATTGTCGATTGTGTCCGAACT 2754900 Query 33696 TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| |||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 2754901 CTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCACAAAAATTTGCAT 2754954 >seq9 Length=25348792 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || ||| || || ||||||||||||| || || | | || ||| Sbjct 3789898 ACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCTGCCATCTTCC 3789839 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| || || || || |||| |||||||| || |||| | ||||| ||||| Sbjct 3789838 AGTTGCTTCCCTGCGAATATCAGCCGCTGCTGGTCCGGCGGTATTCCTTCCTTGTCTTGG 3789779 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| |||| ||| || | |||||| || || || || | ||| || || || Sbjct 3789778 ATCTTCGCCTTCA-CATTATCGATGGTGTCCGACGACTCGACCTCTAGCGTTATTGTCTT 3789720 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 ||| || | ||||| || ||||||||||| ||| || Sbjct 3789719 ACCCGTCAGGGTTTTCACGAAGATCTGCATCTTTGCTG 3789682 >seq1 Length=42390363 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || ||||| ||||| | Sbjct 13907379 CCACCACGGAGACGAAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCA 13907438 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || |||| || | |||||||||||| || || | | |||||| ||| | || Sbjct 13907439 AGTGTACGACCGTCCTCAAGTTGTTTTCCGGCGAAGATTAGCCTCTGCTGGTCTGGAGGA 13907498 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | |||||| || || ||| || | | || | ||| | |||||| ||| ||| Sbjct 13907499 ATACCTTCCTTATCTTGAATCTT-AGCCTTGACGTTGTCGATGGTGTCAGAGCT---TTC 13907554 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || |||||||||||||| Sbjct 13907555 GACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 13907605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684814882880