Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2164 127 3e-24 seq8 118 1e-21 seq5 86.0 9e-12 seq7 84.2 3e-11 >seq2164 Length=5404 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || || ||||| |||| ||| || Sbjct 4121 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 4180 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||| ||| | || || ||||| | || Sbjct 4181 ATTCGATGTCCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATATTTTGAGCTGA 4240 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| ||||||||||| || ||| | |||||| ||||| ||||||||||| Sbjct 4241 TACACCAATTCCTCCTGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTGTCATATAT 4300 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||| | ||| || || ||| Sbjct 4301 GCCTTCAATGCTATCATCTTTCATGCACACAAGGAAGCAACTA 4343 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | || ||||| || ||||||||||| | ||| | || || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| | ||| | || || ||||| || ||||| || | | || | ||| ||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTGTGAATCCCAACAGAAACCCTCATTAAC 4586 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||| || || | || ||| || ||||| || | ||||| Sbjct 4587 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAGG 4646 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || ||||| ||||| || | ||| ||| || || || || || || Sbjct 4647 GTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCATAGATTAT 4693 >seq8 Length=23350829 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | || || | ||| | || || ||||| |||| ||| || Sbjct 17136278 TCCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 17136219 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||||||||| ||| | || ||||||||| ||| || Sbjct 17136218 ATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGA 17136159 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || || ||| | |||||| ||||| || |||||||| Sbjct 17136158 GACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATAT 17136099 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||| | ||| || || ||| Sbjct 17136098 GCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAACTA 17136056 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | ||| || | || ||||| || ||||||||||| | || | || | | Sbjct 17135912 GTTCCTGAATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGGGACATCAAGTGG 17135853 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||| || || ||||| || |||| |||||| || || | ||||||| Sbjct 17135852 TATGTTTTGATAGCAGAATCAATATCATCCTTATGAGTTCCTACAGCAACCCTCATCAAC 17135793 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| ||||| | ||| || || | || ||| || ||||| || | || || Sbjct 17135792 ATATGTTGAGGCCTTTCAACAACCTTCCCCTGTACTTTTAAGAGGTAGGACCTCTCAAGG 17135733 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || ||||| || | || |||||| || |||||||| || Sbjct 17135732 GTCTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 17135686 >seq5 Length=31365312 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | || ||||| || ||||||||||| | ||| | || || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| | ||| | || || ||||| || ||||| || | | || | ||| ||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTGTGAATCCCAACAGAAACCCTCATTAAC 24811794 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||| || || | || ||| || ||||| || | ||||| Sbjct 24811793 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAGG 24811734 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || ||||| ||||| || | ||| ||| || || || || || || Sbjct 24811733 GTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCATAGATTAT 24811687 >seq7 Length=27644224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || || ||||| || ||||||||||||||| ||| | || || || ||||| || Sbjct 22709650 CAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTTAGA 22709709 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 |||||||| | || | |||||| ||||||||||||||| Sbjct 22709710 CCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGGCA 22709748 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || || ||||| || ||||||||||||||| ||| | || || || ||||| || Sbjct 22995866 CAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTTAGA 22995807 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 |||||||| | || | |||||| ||||||||||||||| Sbjct 22995806 CCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGGCA 22995768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867679921960