Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq3849 158 4e-34 seq1419 145 2e-30 seq1805 129 2e-25 seq1964 104 7e-18 >seq3849 Length=2123 Score = 158 bits (174), Expect = 4e-34 Identities = 238/336 (71%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 47434 GCACCGGCCATTGGAACGGCGATCGCCGCCAGTCCACGGTCTGGTCGATCGACCATATG- 47492 ||||||| || |||| ||| || ||| ||| | || ||||| ||||| ||| | Sbjct 134 GCACCGGGCACTGGAGCGGTGACCGCAAGCAGACGACCCTCTGGCAGATCG-CCAGCCGG 192 Query 47493 ----AAGAA--CGACACCGGGCACGGAACGCAGAAGCCGGTGGAGTGCATGCGTCGCCCG 47546 |||| ||| ||| ||||| |||||||||||||| ||||||||| | ||| Sbjct 193 GGCCAAGACGCCGAGACCACCCACGGCACGCAGAAGCCGGTCGAGTGCATGGCCAGGCCG 252 Query 47547 ATCGTCAATAATTCGTCGCCGGGACAGGTGGTCTACGACCCGTTCCTGGGCTCCGGCACC 47606 ||| || || || ||||| || ||||| ||||| || ||| |||||||||||| Sbjct 253 ATCCGGAACAACTCCAGCCCGGGCCAAGTGGTGTACGAGCCCTTCTGCGGCTCCGGCACC 312 Query 47607 ACGCTGATCGCCGCCGAGACCGAAGGCCGCGCCTGCTACGGCTCGGAGCTGTGGCCGGCT 47666 || |||||||||||||||| || || || || ||| ||| | ||||||| |||||| Sbjct 313 ACCCTGATCGCCGCCGAGATGGAGGGTCGAGCTTGCCACGCCGTCGAGCTGTCGCCGGCC 372 Query 47667 TATGTCGATGTCATCGTTCGGCGGTGGCAGGAGTTTACCGGCCTCGAGGCGACGCTGGAC 47726 |||||||| || || || ||||||| || ||||| | ||||| | ||| Sbjct 373 TATGTCGACGTGGCGGTGGCCCGTTGGCAGGCATTCACCGGGCAGCAGGCGGTGTTGGCT 432 Query 47727 GGCGATGGCCGGACCTTCGCCGCGATCGCCGCCGAG 47762 ||||| ||||| | ||||| || || |||| |||| Sbjct 433 GGCGAGGGCCGCAGCTTCGGCGACATGGCCGGCGAG 468 >seq1419 Length=10924 Score = 145 bits (160), Expect = 2e-30 Identities = 301/444 (68%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 46917 CCCGAGGCGCCGGTGGTGCCGATCTCGCAAGCTGGCGATCTGTGGCTCATGGGGCCGCAC 46976 || ||| | |||| ||||||||| | | ||||| || ||| |||| ||||| Sbjct 5263 CCAGAGCCCCCGGAAGTGCCGATCAGCCGGCCCGGCGACCTCTGGGAGCTGGGACCGCAT 5322 Query 46977 CGCTTGGTCTGCGGCGACTCCACGTCGGCGGCCTCGGTGTCGCGGCTGTTGAACGGCGTT 47036 ||| || ||||||||||| ||||| ||| | ||||| || || || | || | Sbjct 5323 CGCCTGCTCTGCGGCGACGCCACGGTGGCCGAAGACGTGTCCCGCCTCCTGGATGGGACT 5382 Query 47037 GTGCCGCTGTTGATGGTCACCGACCCGCCCTATGGCGTGAAGTACGATCCGAAGTGGCGC 47096 |||| | || ||||| ||||||| ||||| ||||| |||||| || ||||||| Sbjct 5383 ATGCCCCACCTGTTGGTCTCCGACCCACCCTACGGCGTCGGGTACGACCCTGCGTGGCGC 5442 Query 47097 ACCGAGGCCGGTTACGGCTCGGC--CGGGCAGGCGAACGGTGTGGTGCAGAACGACGACC 47154 | | |||||| | |||| | | | | | | ||| ||| || ||||||| Sbjct 5443 AATGCTGCCGGT---GTCTCGACAACCGCCCGT--ACCGGACGGGTAGCCAATGACGACC 5497 Query 47155 GCGCCGACTGGCGTGAAGCCTGGGCGCTGTTCCCGGGCGATGTCGCCTATGTCTGGCACG 47214 | || |||||||| | |||||||| ||||||||||||| || || ||||||||||||| Sbjct 5498 GTGCGGACTGGCGACAGGCCTGGGCACTGTTCCCGGGCGCAGTGGCGTATGTCTGGCACG 5557 Query 47215 GCGCGCTGCATGCCGGCGTCG---TCGAGGCCAGTCTGAAAGCGGCCGGGTTCGAGACGC 47271 || |||||||| | || | ||||| || | | || |||| |||| | Sbjct 5558 CCGGCGTGCATGCCCGGGTAGTGATCGAG---AGCTTCGAGGCAGCCGACTTCGTTGTCC 5614 Query 47272 GCTCGCAGATCATCTGGGTGAAGCAGCGGCCGGTGTTCTCGCGTGGTCACTACCACTGGC 47331 || |||||| |||||| |||| ||| ||| | || || |||||||||||| Sbjct 5615 GCAGTCAGATCGTCTGGGCCAAGCCGCGCTTCGTGCTGGGCCGGGGCGACTACCACTGGC 5674 Query 47332 AGCACGAACCCGCGCTCTATGCCG 47355 ||||||| || ||||| |||| Sbjct 5675 AGCACGAGCCTTGCCTCTACGCCG 5698 Score = 111 bits (122), Expect = 5e-20 Identities = 171/239 (72%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 47498 CGACACCGGGCACGGAACGCAGAAGCCGGTGGAGTGCATGCGTCGCCCGATCGTCAATAA 47557 || ||| | |||||| |||||||||||||| || |||||||| || |||||| | || || Sbjct 5784 CGCCACGGTGCACGGCACGCAGAAGCCGGTAGAATGCATGCGGCGGCCGATCCTGAACAA 5843 Query 47558 TTCGTCGCCGGGACAGGTGGTCTACGACCCGTTCCTGGGCTCCGGCACCACGCTGATCGC 47617 || | || ||| ||| |||||||| ||||| ||| || || |||||||| || Sbjct 5844 CAGCGCGGCTGGTGAGGCGGTTTACGACCCCTTCCTCGGCAGTGGGACGACGCTGATGGC 5903 Query 47618 CGCCGA---GACCGAAGGCCGCGCCTGCTACGGCTCGGAGCTGTGGCCGGCTTATGTCGA 47674 ||||| ||| | ||| ||| |||||| || |||| | || |||||||| Sbjct 5904 GGCCGAAGTGAC--AGGGCGGCG-CTGCTATGGACTGGAGATCGACCCTCGCTATGTCGA 5960 Query 47675 TGTCATCGTTCGGCGGTGGCAGGAGTTTACCGGCCTCGAGGCG--ACGCTGGACGGCGA 47731 ||| ||| || || |||||||| | ||||| |||| ||| | ||||||||| || Sbjct 5961 TGTTGCCGTGCGCCGATGGCAGGACCTGACCGG--TCGACGCGCCATGCTGGACGGTGA 6017 >seq1805 Length=7272 Score = 129 bits (142), Expect = 2e-25 Identities = 229/329 (70%), Gaps = 19/329 (6%) Strand=Plus/Plus Query 46907 GGACGATGTTCCCGAGGCGCCGGTGGTGCCGATCTCGCAAGCTGGCGATCTGTGGCTCAT 46966 ||||| || || ||| |||||| | ||| | | | ||||||| | |||| | Sbjct 6953 GGACGCGGTGCCGGAGACGCCGGCCGAGCCCGTGACCCGCCCTGGCGACGTCTGGCAGCT 7012 Query 46967 GGGGCCGCACCGCTTGGTCTGCGGCGACT---CCACGTCGGCGGCCTCGGTGTCGCGGCT 47023 ||| | ||||| | | ||||||||| |||| ||| ||| ||||||||| Sbjct 7013 GGGACGCCACCGGCTAGCTTGCGGCGACAGCACCACCCCGGAGGC-----TGTCGCGGCC 7067 Query 47024 GTT--GAACGGCGTTGTGCCGCTGTTGATGGTCACCGACCCGCCCTATGGCGTGAAGTAC 47081 | | | |||||| ||||| |||||||||| ||||||||||||||||| ||||| Sbjct 7068 GCTCTGGCCGGCGTCCGGCCGCATCTGATGGTCACGGACCCGCCCTATGGCGTCGAGTAC 7127 Query 47082 GATCCGAAGTGGCGCA-CCGAGGCCGGTTACGGCTCGGCCGGGCAGGCG--AACGGTGTG 47138 || || ||||||| ||| | ||| | ||| || | | || | ||| | Sbjct 7128 GACCCCGCCTGGCGCAACCGCG--CGG----GCCTCAGCAGCACCCGCCGCACCGGAGCC 7181 Query 47139 GTGCAGAACGACGACCGCGCCGACTGGCGTGAAGCCTGGGCGCTGTTCCCGGGCGATGTC 47198 ||| || ||||| || || |||||||| || |||||||||||||| || ||||| ||| Sbjct 7182 GTGGCCAATGACGATCGGGCGGACTGGCGCGAGGCCTGGGCGCTGTTTCCCGGCGAGGTC 7241 Query 47199 GCCTATGTCTGGCACGGCGCGCTGCATGC 47227 |||||||||||||| ||||| || || || Sbjct 7242 GCCTATGTCTGGCATGGCGCACTTCACGC 7270 >seq1964 Length=6274 Score = 104 bits (114), Expect = 7e-18 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46447 TGCTCGAGGAGCTGGTCCCGTATGACCGGAACGCTCGCAAGCACTCGGCGGCGCAGGTCG 46506 || ||| || |||||||| |||| |||||| || |||| ||| || | ||||||||| | Sbjct 5903 TGGTCGCCGATCTGGTCCCCTATGCCCGGAATGCCCGCACGCATTCTGAGGCGCAGGTGG 5962 Query 46507 ATAAGATCGTGGCGTCAATCCGTGAGTTCGGGTTCACCAATCCGCTCCTGGTCGA 46561 |||||| ||||| |||||||||||||| |||||||| || |||||||||| Sbjct 5963 CGCAGATCGCCGCGTCGATCCGTGAGTTCGGCTTCACCAACCCCATCCTGGTCGA 6017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152829708175716