Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq38 109 5e-19 seq4 107 2e-18 seq12 104 2e-17 seq1 93.3 4e-14 seq10 87.8 2e-12 seq3 87.8 2e-12 >seq38 Length=323574 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || || || | || | || || || || || |||||||| ||| Sbjct 34429 TGCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 34370 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || ||||||| | ||||| || ||| | || |||||||| || ||||| | Sbjct 34369 CAAGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAG 34310 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||||| ||| | | | || | ||||| | | |||| Sbjct 34309 GAATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAA 34250 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| ||||| | || || || ||||| ||||| |||||||||||| Sbjct 34249 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAGATTTGCATA 34200 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || || || | || | || || || || || |||||||| || Sbjct 52695 TGCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCTG 52636 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | ||||| | || || || ||| | || |||||||| || ||||| | Sbjct 52635 CAAGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAG 52576 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||||| ||| | | | || | || || | | |||| Sbjct 52575 GAATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTATCGGAGCTCTCAA 52516 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| ||||| | || || || ||||| ||||| || ||||||||| Sbjct 52515 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAAATTTGCATA 52466 >seq4 Length=30445767 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || ||||| ||||||| | || | || |||| || Sbjct 3595643 ACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTTGGCCAAAGTCCGGCCGTCCTCC 3595584 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | ||||| ||||||||||| || || | || || || || Sbjct 3595583 AGCTGTTTTCCGGCGAAGATGAGTCGCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGT 3595524 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||||| | | || | ||||| | | ||||| |||| ||||| | ||| Sbjct 3595523 ATCTTCGCTTTCACGTTGTCGATGGTGTCCGACGACTCAACCTCTATGGTTATGGTCTTG 3595464 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| || |||||||| Sbjct 3595463 CCCGTAAGGGTTTTCACGAAAATTTGCAT 3595435 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||| | || | || |||| || |||||||| ||| Sbjct 2276516 GTCGACTCCTTCTGAATGTTGTAGTTGGCCAAAGTCCGGCCGTCCTCCAGCTGTTTTCCG 2276457 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||||||||| || | | || || || || ||||| |||| Sbjct 2276456 GCGAAGATGAGTCGCTGTTGATCAGGAGAAATTCCTTCCTTGTCTTGTATCTTCGCTTTC 2276397 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| |||| ||||| | |||||||| || ||| Sbjct 2276396 ACGTTGTCGATGGTGTCCGACGACTCAACCTCTATGGTTATGGTCTTGCCCGTAAGGGTT 2276337 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || |||||||| Sbjct 2276336 TTCACGAAAATTTGCAT 2276320 >seq12 Length=19346091 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || || || | || | || || || || || |||||||| ||| Sbjct 17382178 TGCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 17382119 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || ||||||| | ||||| || ||| | || |||||||| || ||||| | Sbjct 17382118 CAAGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAG 17382059 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||||| ||| | | | || | ||||| | | |||| Sbjct 17382058 GAATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAA 17381999 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| ||||| | || || || ||||| || || |||||||||||| Sbjct 17381998 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATA 17381949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || || || | || | || || || || || |||||||| || Sbjct 17399426 TGCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCTG 17399367 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | ||||| | || || || ||| | || |||||||| || ||||| | Sbjct 17399366 CAAGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAG 17399307 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||||| ||| | | | || | ||||| | | |||| Sbjct 17399306 GAATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAA 17399247 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| ||||| | || || || ||||| || || |||||||||||| Sbjct 17399246 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATA 17399197 >seq1 Length=42390363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || |||||||| || || || |||| || Sbjct 34329800 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGC-CGTCCTC 34329742 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||| |||||| | ||||| | ||| || ||||| || | |||||| || || Sbjct 34329741 AAGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTG 34329682 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | || | |||||| | ||| || || ||||| || | ||| Sbjct 34329681 AATCTTGGCCTTCACGTTGTCAATAGTGTCGGAACTTTCGACCTCCAGAGTAATGGTTTT 34329622 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 34329621 TCCGGTGAGGGTCTTGACAAAGATTTGCAT 34329592 >seq10 Length=20983256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || ||| | |||| || | || || || || || |||||||||||| Sbjct 6074303 CCTCCCCTCAGCCGAAGCACCAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 6074244 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| ||||||||||| |||||| | ||||| | ||| || ||||| || Sbjct 6074243 AGAGTACGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 6074184 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| |||| | || | || || | | ||||| Sbjct 6074183 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTATCCGACGACTCAACC 6074124 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||| ||||| | || || || || |||||||| ||||| ||||| | ||| Sbjct 6074123 TCTAAGGTTATGGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCGTTGC 6074071 >seq3 Length=26737297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || ||||| || || |||||| || ||||| | || || || || || ||||| || Sbjct 2107690 TCCTTTTGGATGTTATAGTCGGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAAA 2107631 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || | ||| ||||| || || | |||||||| || ||| || |||| | Sbjct 2107630 ATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATTG 2107571 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | || || || ||||| || | |||||| ||||||||||||||| Sbjct 2107570 TCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCACA 2107511 Query 27237 AAGATTTGCAT 27247 || |||||||| Sbjct 2107510 AAAATTTGCAT 2107500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || | ||||| | |||||||| | ||||| ||||| || ||||||||||| | Sbjct 2106588 TGCCACCTCTCAACCTGAGAACCAAATGAAGGGTAGATTCTTTCTGGATATTGTAGTCTG 2106529 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || ||| || | || || |||||||| || || | ||||| | ||| || || || Sbjct 2106528 CTAGTGTCCTGC-CATCCTCAAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGT 2106470 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || ||||| ||||| | || | ||||| | ||| Sbjct 2106469 GGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATGGTGTCGGAACTCTCA 2106410 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || | ||| || || || || |||||||| || ||||| Sbjct 2106409 ACCTCGAGAGTGATGGTTTTCCCAGTGAGTGTCTTCACAAATATCTGCAT 2106360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || ||||| || || ||||| || ||||| | || || || || || ||||| || Sbjct 2754764 TCCTTTTGGATGTTATAGTCAGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAAA 2754823 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || | ||| ||||| || || | |||||||| || ||| || |||| | Sbjct 2754824 ATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATTG 2754883 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | || || || ||||| || | |||||| ||||||||||||||| Sbjct 2754884 TCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCACA 2754943 Query 27237 AAGATTTGCAT 27247 || |||||||| Sbjct 2754944 AAAATTTGCAT 2754954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424909598305368