Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 105 8e-18 seq2164 93.3 5e-14 seq5 91.5 2e-13 >seq4 Length=30445767 Score = 105 bits (116), Expect = 8e-18 Identities = 267/403 (66%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || |||| || | || ||||| | ||||| || ||||| || || | Sbjct 26227833 TTAGTAGCTGCAACGACAATGATACCAGTGTTGCCTTCAAAACCGTCCATTTCTGTCAAA 26227892 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGT 11617 | ||| |||| || |||||||| ||||||||| || |||| |||| || | | Sbjct 26227893 AGTTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC---ACCAATTCCAGTACCTCTT 26227949 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || |||||||| ||||||| || ||||| || ||| ||| || ||| Sbjct 26227950 TGCCTTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGCC 26228009 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | ||| ||||| || || | ||||| |||||||||||||| || ||||| | Sbjct 26228010 TTCTTAAAAAGATCACGCACTCGAGAAGCACCAACACCAACAAACATTTCTACAAACTCA 26228069 Query 11738 GCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 | | || | ||| | ||||| ||| | ||| || || || || ||| || | Sbjct 26228070 GAACCTGA--AATGGAAAAAAATGGAACACCAGCTTCTCCAGCAATTGCCTTGGCTAGCA 26228127 Query 11796 GGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCAC 11855 | |||||||| || ||||| ||| | ||||| | ||| ||||| || ||| Sbjct 26228128 GAGTCTTTCCAGTTCCTGGGGGACCAACAAGAAGAACTCCTTTAGGGATGCGAGCCCCAA 26228187 Query 11856 TTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || | ||||| |||| ||| | ||| ||||| | ||| Sbjct 26228188 CCGCAGTGAACCTCTCAGGTTTCTTCAAAAACTCCACCACCTC 26228230 >seq2164 Length=5404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || |||||||| || ||||| || ||||| || | || ||| ||||| | || Sbjct 4454 CTGAGGCCTTGGTGTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 4513 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | | |||||||| | ||||||||||| || ||| ||| || || | | Sbjct 4514 AGACATCATATGGTATGTCTTGATAACAGAATCAATATCATCCTTGTGAATCCCAACAGA 4573 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||||| ||| || |||| | | | || | | | || |||| Sbjct 4574 AACCCTCATTAACATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTA--CTTTTAAGAGG 4631 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 ||| | |||| ||||| || | |||||||||| || | ||| | |||| Sbjct 4632 TAGGACCTCTCCAGGGTCTTAAAACCAAAGTAATCATATTCAAAATCCC 4680 >seq5 Length=31365312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || ||||| || ||||| || | || ||| ||||| | || Sbjct 24811925 TGAGGCCTTGGTGTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGA 24811866 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | | |||||||| | ||||||||||| || ||| ||| || || | | Sbjct 24811865 GACATCATATGGTATGTCTTGATAACAGAATCAATATCATCCTTGTGAATCCCAACAGAA 24811806 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||||| ||| || |||| | | | || | | | || |||| | Sbjct 24811805 ACCCTCATTAACATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTA--CTTTTAAGAGGT 24811748 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | |||| ||||| || | |||||||||| || | ||| | |||| Sbjct 24811747 AGGACCTCTCCAGGGTCTTAAAACCAAAGTAATCATATTCAAAATCCC 24811700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994404434400