Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 125 9e-24 seq4 89.7 6e-13 seq6 82.4 9e-11 >seq9 Length=25348792 Score = 125 bits (138), Expect = 9e-24 Identities = 529/817 (65%), Gaps = 29/817 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 129784 ||| || || |||| |||||||||||| ||||||||||| | ||| ||||| |||| Sbjct 24571630 ATACTCTCCGACCCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAAC--GATATCAGCTCC 24571573 Query 129785 ATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAG 129843 || ||||||||||||||| || |||| | | | || |||| || | Sbjct 24571572 ATCCAATCAAATGGGTTCTGAACATTGTAAATCTTCCCGTACCCCAAAGCACCC-AGCAA 24571514 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 | ||| | || |||||||||||| |||| || |||||| || | || Sbjct 24571513 CCTATCAGCCACAAACTCAATGTACTGGCTCATCAGATCACCGTTCATCCCCACCAGAGC 24571454 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 ||| || | |||||| | | |||| | |||| || || || || || || ||||| | Sbjct 24571453 ACACGGCAACGCGTCGCACACGAACTCTCTCTCTATATCAACCGCGTCGCGAACGATTCC 24571394 Query 129964 GTGAA-TGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAA 130020 | || | || ||| || ||| | | || | || | || | || |||| | || Sbjct 24571393 CTTAACTCGT-TCCTCGCTCAGCT-TCTTCCTCATCAGCGTGTAAAGCAAGCACG-CGAA 24571337 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| | ||||||||| || ||||| | || |||||||| || || ||||| Sbjct 24571336 GTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGCCCGGGCAT 24571277 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | || |||||||||| ||| || ||||| || || || || ||||| |||||||| Sbjct 24571276 CAACCCGCGCTTCTTCAGCCAAAATATCGCGCAGAAGCTCCCCGAAAAGAAAATCCCCTC 24571217 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTT 130200 ||| || ||||| |||| | |||||| || || || || | || | |||| Sbjct 24571216 CACGCAAGCGAAAGCAACCAAACGCTCCGCGAACGATTCGG---TGCCGTCGATCCACCG 24571160 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 | ||||| | ||||| || | | ||| |||||||||| ||| || | || || Sbjct 24571159 GAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCATGGAAAAGCCG 24571100 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATC---TATGAGTTTTGAATATGTTTCGCC 130317 ||||| || || |||||||| || | || | ||| | ||| ||||| Sbjct 24571099 GTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCT---ATACATTTCGGA 24571043 Query 130318 ATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 130375 |||| ||| ||||||| ||| | | ||||||| ||| || || | ||| Sbjct 24571042 GTGGA--TATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGCGACCTGA 24570985 Query 130376 ACCTCATCTGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 130433 ||||| || || || | || |||||| ||||| || || || || |||||| Sbjct 24570984 ACCTC--CTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCAGCAA 24570927 Query 130434 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGT 130493 | || || || | || | ||||| | || || | | | ||| | | ||||| Sbjct 24570926 AGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCAGTGAC 24570867 Query 130494 CAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 || ||||| ||||| || |||||||| || ||||| Sbjct 24570866 GAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCA 24570830 >seq4 Length=30445767 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || | ||||| ||| || || | | ||||| || ||||| || ||||| Sbjct 26227832 GTTAGTAGCTGCAACGACAATGATACCAGTGTTGCCTTCAAAACCGTCCATTTCTGTCAA 26227891 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCG 14229 ||||| || | ||| ||||| | ||||||||| | |||| || | || | Sbjct 26227892 AAGTTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC---ACCAATTCCAGTACCTCT 26227948 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 |||| | || || || ||||||||||| | || || || || ||| ||| || ||| Sbjct 26227949 TTGCCTTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC 26228008 Query 14290 AACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 |||| ||| | ||| ||||||| ||||| ||||| |||||||| || ||||| Sbjct 26228009 --CTTCTTAAAAAGATCACGCACTCGAGAAGCACCAACACCAACAAACATTTCTACAAA 26228065 >seq6 Length=25259912 Score = 82.4 bits (90), Expect = 9e-11 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GG 14211 ||||||||||||||||| ||||| || || || ||||| || | |||||||| || Sbjct 581912 AAGCCATCCATCTCAGTTAAGAGCTGGTTAATAGTTTGCTCCCTCTCATCATTTCCACCT 581971 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | || ||| || | | ||| | || || || ||||| ||||| || || || || || Sbjct 581972 CCTA-GACCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCTATAAACACAATGCA 582030 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || || ||| || ||| || || | ||| | |||||| || || || |||| Sbjct 582031 AGG-TGCTTTGGACTTGGCCTTCTCGAACAAATCCCTCACTCTTGAAGCTCCCACTCCCA 582089 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||| | || ||||| | | || | |||| || ||| || ||| || ||||| | Sbjct 582090 CAAAAAGTTCAACAAATTCTGAAGCTGCACATGAGAAGAAAGGCACGCCAGCCTCACCAG 582149 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | | || || || | ||||| ||||| || || ||| Sbjct 582150 CCACAGCCCGTGCCAAAAGGGTTTTCCCAGTACCGGGT 582187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618398178922840