Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-26 seq6 91.5 2e-13 >seq4 Length=30445767 Score = 132 bits (146), Expect = 6e-26 Identities = 275/400 (69%), Gaps = 16/400 (4%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCA 9632 || || || || | ||||| ||||| |||| | || ||||||| ||||| ||||||| Sbjct 26227833 TTAGTAGCTGCAACGACAATGATACCAGTGTTGCCTT--CAAAACCGTCCATTTCTGTCA 26227890 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGC 9689 |||||||||||| || ||||| | ||||||||| || |||| |||| || | Sbjct 26227891 AAAGTTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CCACCAATTCCAGTACCTC 26227947 Query 9690 GTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 |||| |||| || |||||||| ||||||| || || ||||| ||| ||| || | | Sbjct 26227948 TTTGCCTTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTC-CTTG 26228006 Query 9750 CGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 | |||| ||| ||||| || || || || || |||||||||||||| || ||||| Sbjct 26228007 -GCCTTCTTAAAAAGATCACGCACTCGAGAAGCACCAACACCAACAAACATTTCTACAAA 26228065 Query 9808 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866 | | | ||| || | | || || ||| || ||| || ||||| || ||| | Sbjct 26228066 CTCAGAACCTGAA-ATGGAAAAAAATGGAACACCAGCTTCTCCAGCAATTGCCTTGGCTA 26228124 Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 9926 | |||||||| || || ||||| ||| | || || | ||| || || || | Sbjct 26228125 GCAGAGTCTTTCCAGTTCCTGGGGGACCAACAAGAAGAACTCCTTTAGGGATGCGAGCCC 26228184 Query 9927 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || | | |||||||||| ||| | ||| ||||| Sbjct 26228185 CAACCGCAGTGAACCTCTCAGGTTTCTTCAAAAACTCCAC 26228224 >seq6 Length=25259912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 249/373 (67%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTGG 9672 || ||||||||||| || || || |||||||||||||| |||| |||||| ||| Sbjct 581912 AAGCCATCCATCTCAGTTAAGAGCTGGTTAATAGTTTGCTCCCTCTCATCATTTCCACCT 581971 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | || ||| || | | ||| | || || |||||||||||||| || || || ||||| Sbjct 581972 CCTA-GACCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCTATAAACACAATGCA 582030 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788 || || ||| | | | || || || | ||||| ||| |||| || ||||| | Sbjct 582031 AGG-TGCTTTGGACTTG-GCCTTCTCGAACAAATCCC--TCACTCTTGAAGCTCCCACTC 582086 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||| | || ||||| | || || | |||| || ||| || || || |||| Sbjct 582087 CCACAAAAAGTTCAACAAATTCTGAAGCTGCACATGAGAAGAAAGGCACGCCAGCCTCAC 582146 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | || | || || || | ||| || || || ||||| || || | | |||| || Sbjct 582147 CAGCCACAGCCCGTGCCAAAAGGGTTTTCCCAGTACCGGGTGGTCCAACCAAGAGGCAAC 582206 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || || || |||||||| || ||| | || || | ||| | ||||| |||| Sbjct 582207 CTTTCGGGATTTTGGCGCCGAGGGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACAA 582266 Query 9969 TTTCTTCCAATTC 9981 |||| ||||| Sbjct 582267 CCTCTTGTAATTC 582279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225884550360