Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 >seq9 Length=25348792 Score = 131 bits (144), Expect = 2e-25 Identities = 555/864 (64%), Gaps = 12/864 (1%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | |||||| | | |||| |||| |||||||| | || |||||| Sbjct 24570773 TTTCCGATCCAATACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAGGCCTCCTTCTGG 24570832 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | |||||| | || | | ||||| || || | |||| Sbjct 24570833 ACCGCCGAGGAGGTCGACCTCTCTCAGGATGTTCGTCACTGGGAAAACCTAACCCCCGAC 24570892 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||| |||| ||||| | || || || ||||| || || || || || || || Sbjct 24570893 GAGAAGCACTTCATTTCGCATGTGCTCGCTTTCTTTGCTGCCTCAGACGGCATCGTTTTG 24570952 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || ||| | | | || || ||||| || ||| | || ||||| || | ||||| Sbjct 24570953 GAGAATCTCGCCGGGAGGTTCATGAAGGAGGTTCAGGTCGCAGAGGCTCGCGCTTTCTAT 24571012 Query 59802 GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAG 59861 | | ||| || ||| |||||||||||| | ||| ||| || |||| | Sbjct 24571013 GGCTTCCAGATTGCCATAGAGAATATCCACTCCGAAATGTATAGCCTCTTGCTCGAAACC 24571072 Query 59862 TTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGC 59920 | |||| || |||| |||||| | || |||| |||||| |||| |||||| | Sbjct 24571073 TATATCAAAGACCCGGTCGAGAAGAACCGGCTTTTCCATGCCATCGAGACCGTCCCTTG- 24571131 Query 59921 AGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCATTTGCA 59978 || | || || ||||||||| | | |||||| || | | || ||| || || Sbjct 24571132 TGTGGCCAAGAAGGCCGAATGGGCCCTCCGGTGGATCGACGGCACCGA--ATCGTTCGCG 24571189 Query 59979 CAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 | ||| | | ||||| || |||||||| || || ||||| || || ||||| || Sbjct 24571190 GAGCGTTTGGTTGCTTTCGCTTGCGTGGAGGGGATTTTCTTTTCGGGGAGCTTCTGCGCG 24571249 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || || ||||| || ||||| || | ||||| || || | |||||| |||||| |||| Sbjct 24571250 ATATTTTGGCTGAAGAAGCGCGGGTTGATGCCCGGGCTCACTTTCTCGAACGAGTTGATC 24571309 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTAT-TGGA 60157 || || |||||||| | || || || || ||| | || | ||| | || ||| Sbjct 24571310 TCGCGAGACGAGGGTTTGCACTGCGACTTCGC-GTG-CTTGCTTTACACGCTGATGAGGA 24571367 Query 60158 AAAA--TGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGC 60215 | || || | || || || | || |||| || ||| | ||||| Sbjct 24571368 AGAAGCTGAGCGAGGAACGA-GTTAAGGGAATCGTTCGCGACGCGGTTGATATAGAGAGA 24571426 Query 60216 GAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACG 60275 |||||| | || ||| | || || || | || ||| ||| || |||| Sbjct 24571427 GAGTTCGTGTGCGACGCGTTGCCGTGTGCTCTGGTGGGGATGAACGGTGATCTGATGAGC 24571486 Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTAC 60335 ||||||||| ||||||| || || | | ||| || || | || |||||| Sbjct 24571487 CAGTACATTGAGTTTGTGGCTGATAGGTTGCTGGGTGCTTTGGGGTACGGGAAGATTTAC 24571546 Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395 || | ||||| || || ||||||||| || |||||| | |||||||| || ||| Sbjct 24571547 AATGTTCAGAACCCATTTGATTGGATGGAGCTGATATCGTTGCAGGGGAAGACAAATTTC 24571606 Query 60396 TTTGAGAAGCGGGTCGGGGATTAT 60419 || |||||| ||||||| || ||| Sbjct 24571607 TTCGAGAAGAGGGTCGGAGAGTAT 24571630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491963934160