Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2459 120 3e-22 seq2 91.5 2e-13 seq10 89.7 6e-13 seq25 82.4 8e-11 >seq2459 Length=4343 Score = 120 bits (132), Expect = 3e-22 Identities = 250/369 (68%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 124530 ACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCT 124589 ||| |||| || || || |||||||| ||| |||||||| || | ||| |||||| Sbjct 1078 ACGTAATCGTCCGGCTTCTCCTGCTGCAGCATGAGCCACATCGCCTCGACATAGTCCCGG 1137 Query 124590 GCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCC--GTCT 124647 || ||||||||||||||||||||||| || || || | || || ||||||| | | Sbjct 1138 GCATGCCCCCAGTCGCGCTTGGCATCGAGATTCCCCATCTGGAGCTCCTTGGCCAGGCCA 1197 Query 124648 TGTTCCACTCCGCCAAACCCAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCG 124705 | | | |||| | | | || || | ||||||||| || |||||| ||||| | Sbjct 1198 AGCTTGA-TCCGGGCAGCGCCGTCGGTGACCTTGCGCGTGACGAACTCGATGCCGCGCAG 1256 Query 124706 CTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTA 124765 | || |||||||| || || || | | || || ||| | ||||||||| Sbjct 1257 CGGGCTTTCATGGTTGAAGAGGATACCGCTGGATGCGTGCAGACCGAAGCTCTCGCGGTA 1316 Query 124766 GTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAA 124825 ||| ||||||||||| | ||||||| | |||| ||||||| || |||||||| Sbjct 1317 GTTCACCGTCATCCAATGGGCGTAGAGCTTCGCCACGGCATAGGGCGAGCGCGGGTAGAA 1376 Query 124826 TGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGC 124885 || || | || | || || | ||| ||| ||| |||||||||| | || Sbjct 1377 AGGCGTCCTCTCGCTCTGCACCGGCTCCTGGATCAGCCCGTACATCTCCGAGGAGGAGGC 1436 Query 124886 CTGATAGAA 124894 |||||||| Sbjct 1437 TTGATAGAA 1445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 209/314 (67%), Gaps = 13/314 (4%) Strand=Plus/Plus Query 159000 CTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTT 159059 ||| || |||||||||||||| |||||||| || ||| | || || |||||||||||||| Sbjct 1098 CTGCTGCAGCATGAGCCACATCGCCTCGACATAGTCCCGGGCATGCCCCCAGTCGCGCTT 1157 Query 159060 GGCATCCATGTTCCC------GAGCTCGATGACTTTTCCAGACTTTTTCCACTCAGCCAG 159113 |||||| | ||||| |||||| || | ||| ||| ||| |||| Sbjct 1158 GGCATCGAGATTCCCCATCTGGAGCTCCTTGGCCAGGCCAAGCTTGATCCGGGCAGC--- 1214 Query 159114 ACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGAC--TCATGGTTA 159171 ||| |||| ||||||||| || ||||| |||||| | | | | |||||||| Sbjct 1215 GCCGTCGGTGACCTTGCGCGTGACGAACTCGATGCCGCGCAG--CGGGCTTTCATGGTTG 1272 Query 159172 AACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAG 159231 || || || ||| | | ||| ||| || ||||||||| || || ||||| Sbjct 1273 AAGAGGATACCGCTGGATGCGTGCAGACCGAAGCTCTCGCGGTAGTTCACCGTCATCCAA 1332 Query 159232 TATCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTT 159291 | | ||||||| | ||| | || || || || || || || |||| ||| | Sbjct 1333 TGGGCGTAGAGCTTCGCCACGGCATAGGGCGAGCGCGGGTAGAAAGGCGTCCTCTCGCTC 1392 Query 159292 TGAATTGGTTCCTG 159305 || | || ||||| Sbjct 1393 TGCACCGGCTCCTG 1406 >seq2 Length=27986743 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 20378884 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20378825 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 20378824 TGAGCTACGAAAGCA 20378810 >seq10 Length=20983256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 9904442 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9904383 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 9904382 TGAGCTACGAAAGC 9904369 >seq25 Length=483599 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 185559 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 185618 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 185619 TGAGCTACGAGAGCA 185633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183242282200