Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_029047.1 Length=32894 Score E Sequences producing significant alignments: (Bits) Value seq1805 102 2e-17 seq1964 100 6e-17 seq1419 86.0 1e-12 >seq1805 Length=7272 Score = 102 bits (112), Expect = 2e-17 Identities = 184/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 685 TTGATACCATACGCCGGGAACAGCCGGACGCATAGCGCGGAGCAGGTCGCGCAGATCGCT 744 ||||| || || ||| ||||| ||| || || |||| | ||||| ||||||||||| Sbjct 6564 TTGATCCCGTATGCCCGGAACGCCCGCACCCACAGCGACGCACAGGTGGCGCAGATCGCC 6623 Query 745 GCAAGCATTAAAGAGTTCGGATTCAACAACCCAGTGCTGATCGACGCCGACAATGGAATC 804 || ||||| || | || | | | || |||||| | || | || || ||| Sbjct 6624 GCCAGCATCTGCGAATGGGGCTGGACGACGCCGGTGCTGGTGGATGAGGAAGGCGGCATC 6683 Query 805 ATCGCCGGGCATGGCCGATTGCTGGCAGCGCAGAAGCTTGGCATGGATGAGGTGCCGACC 864 |||||||| || ||||| | || || || | | |||||||| | ||||| ||| | Sbjct 6684 ATCGCCGGCCACGGCCGTGTCCTCGCCGCACGGCAGCTTGGCTACGCCGAGGTACCGGTC 6743 Query 865 ATCTGCCTCGACCATCTGAACGACGCACAGCGCCGGGCTTACGTGATCGCCGACAACAAG 924 || | | | | || |||||| ||| || || || ||| | |||||||||||| Sbjct 6744 ATGGTCGCCCGCGGTTGGAGCGACGCCCAGAAGCGCGCCTATGTGCTTGCCGACAACAAG 6803 Query 925 CTCGCGTTGAACGCCGGATGGGACGACGA 953 || || |||||||||| |||||||| || Sbjct 6804 CTGGCTCTGAACGCCGGGTGGGACGAGGA 6832 >seq1964 Length=6274 Score = 100 bits (110), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 691 CCATACGCCGGGAACAGCCGGACGCATAGCGCGGAGCAGGTCGCGCAGATCGCTGCAAGC 750 || || ||| |||| ||| |||||| | || |||||| ||||||||||| || Sbjct 5920 CCCTATGCCCGGAATGCCCGCACGCATTCTGAGGCGCAGGTGGCGCAGATCGCCGCGTCG 5979 Query 751 ATTAAAGAGTTCGGATTCAACAACCCAGTGCTGATCGACGCCGACAATGGAATCATCGCC 810 || |||||||| |||| |||||| | ||| |||| | ||| || |||| || Sbjct 5980 ATCCGTGAGTTCGGCTTCACCAACCCCATCCTGGTCGATGGCGAGCGCGGCGTCATTGCT 6039 Query 811 GGGCATGGCCGATTGCTGGCAGCGCAGAAGCTTGGCATGGATGAGGTGCCGACCATCTGC 870 || ||||| | |||| || || | ||||| || ||| ||||||||||||||| Sbjct 6040 GGCCATGGTAGGCTGCTCGCCGCACGCAAGCTCGGGCTGGTGGAGGTGCCGACCATCGAG 6099 Query 871 CTCGACCATCTGAACGAC-GCACAGCGCCGGGCTTACGTGATCGCCGACAAC 921 |||| || ||| ||| | || |||||||| || ||| | ||||||| ||| Sbjct 6100 CTCGGTCACCTG-ACGCCGGCCCAGCGCCGCGCCTACATCCTCGCCGATAAC 6150 >seq1419 Length=10924 Score = 86.0 bits (94), Expect = 1e-12 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 691 CCATACGCCGGGAACAGCCGGACGCATAGCGCGGAGCAGGTCGCGCAGATCGCTGCAAGC 750 || |||||| ||| ||| || ||| | |||||||| |||||| |||| || Sbjct 4855 CCCTACGCCAACAACGCCCGCACCCATTCGTCCGAGCAGGTGGCGCAGCTCGCGGCGTCG 4914 Query 751 ATTAAAGAGTTCGGATTCAACAACCCAGTGCTGATCGACGCCGACAATGGAATCATCGCC 810 || || ||||| |||| | || ||| ||||||||| || | | | ||| Sbjct 4915 ATCGCCGAATTCGGCTTCACCGTGCCGGTGTTGATCGACGAGCACGGCGTGCTGGTGGCC 4974 Query 811 GGGCATGGCCGATTGCTGGCAGCGCAGAAGCTTGGCATGGATGAGGTGCCGACCATCTGC 870 ||||| || || | || || || | ||| || |||| | || ||| ||||| | Sbjct 4975 GGGCACGGTCGGGTCCTTGCGGCACGTGCGCTGGGGCTGGACGCTGTTCCGGCCATCCGG 5034 Query 871 CTCGACCATCTGAACGACGCACAGCGCCGGGCTTACGTGATCGCCGACAACAAGCTCGCG 930 |||| || ||| ||| || |||| |||||| ||| ||||||||||| ||||||| Sbjct 5035 CTCGGGCACTTGAGCGAGGCTCAGCTCCGGGCCTACCGCCTCGCCGACAACCAGCTCGCC 5094 Query 931 TTGAACGCCGGATGGGACGA 950 |||| ||||| ||||| || Sbjct 5095 CTGAATGCCGGCTGGGATGA 5114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105133220799408