Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 2e-15 seq12 93.3 3e-14 seq38 89.7 4e-13 >seq3 Length=26737297 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||||||||| ||||| ||| ||||| |||| || || || | Sbjct 2107500 ATGCAAATTTTTGTGAAAACTCTGACTGGCAAAACAATTACTCTTGAGGTGGAGAGTTCG 2107559 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||| || | || || | Sbjct 2107560 GACACAATCGACAAT--GTGAAGGCGAAAATCCAAGACAAAGAGGGGATCCCTCCTGATC 2107617 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||||||||| || ||| |||| || | |||| || |||| || | Sbjct 2107618 AGCAGAGGCTTATTTTTGCCGGCAAGCAACTGGAGGATGGGCGCACTCTGGCCGACTATA 2107677 Query 27968 ACATCCAAAAAGAGAGCAC 27986 |||||||||| ||||| || Sbjct 2107678 ACATCCAAAAGGAGAGTAC 2107696 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||||||||| ||||| ||| ||||| |||| || || || | Sbjct 2754954 ATGCAAATTTTTGTGAAAACTCTGACTGGCAAAACAATTACTCTTGAGGTGGAGAGTTCG 2754895 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||| || | || || | Sbjct 2754894 GACACAATCGACAAT--GTGAAGGCGAAAATCCAAGACAAAGAGGGGATCCCTCCTGATC 2754837 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||||||||| || ||| |||| || | |||| || | || || | Sbjct 2754836 AGCAGAGGCTTATTTTTGCCGGCAAGCAACTGGAGGATGGGCGCACTCTGGCTGACTATA 2754777 Query 27968 ACATCCAAAAAGAGAGCAC 27986 |||||||||| ||||| || Sbjct 2754776 ACATCCAAAAGGAGAGTAC 2754758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||||||||| || |||||| |||| || || ||| || Sbjct 2755866 ATGCAAATATTTGTGAAAACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAGAGCTCC 2755807 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| || ||| ||||| || || | || || | Sbjct 2755806 GATACTATTGACAAT--GTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCTGACC 2755749 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCCGAT 27963 | || | | || || || |||||||| ||||| || | |||| |||| | || Sbjct 2755748 AACAGAGACTTATATTCGCTGGAAAACAGTTGGAGGATG---GCAGGACCCTTG-CTGAC 2755693 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || ||| ||| |||||| | || | || ||| | ||||| Sbjct 2755692 TATAACATCCAGAAGGAGTCCACCTTGCATCTTGTCCTTCGGTTGAGGGGCGG 2755640 >seq12 Length=19346091 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || || ||||| || || || ||| |||||| | || ||||| ||| | Sbjct 17381493 AATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACTATTACTTTGGAGGTCGAGAGCTC 17381552 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || |||| ||||| || || ||||| |||||| |||| ||| Sbjct 17381553 CGACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGAT 17381610 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| |||| || || |||||||||||| | || |||| || | |||| ||||||| Sbjct 17381611 CAGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAGGACGGCCGGACTCTTG-CCGATTA 17381669 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || || || | ||| |||| | ||| ||||||| || Sbjct 17381670 CAATATCCAGAAGGAATCAACCCTTCATCTGGTCCTTCGTCTGCGTGGTGG 17381720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| || || || | || ||||| ||| || Sbjct 17398970 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACTTTGGAGGTCGAGAGCTCC 17399029 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || |||||||||||| |||| ||| | Sbjct 17399030 GACACCATTGACAAC--GTCAAGGCCAAGATCCAGGACAAAGAAGGTATTCCACCGGACC 17399087 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||||||||||||| | || || | || | | | ||||||| Sbjct 17399088 AGCAAAGGCTCATCTTTGCCGGAAAACAACTAGAGGATGGCCGGACTCTCGCTGATTACA 17399147 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || || | ||| |||| | ||| | ||||| || Sbjct 17399148 ACATCCAGAAGGAATCGACCCTCCATCTGGTCCTTCGTCTCCGTGGTGG 17399196 >seq38 Length=323574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || || ||||| || || || ||| |||||| | || ||||| ||| | Sbjct 33362 AATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACTATTACTCTGGAGGTCGAGAGCTC 33421 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || |||| ||||| || || ||||| |||||| |||| ||| Sbjct 33422 CGACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGAT 33479 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || |||||||||||| | || |||| || | | |||||||| Sbjct 33480 CAGCAGAGGCTCATCTTCGCCGGAAAACAACTTGAGGACGGCCGGACTCTCGCCGATTAC 33539 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || | ||| |||| | ||| ||||||| || Sbjct 33540 AACATCCAGAAGGAATCGACCCTCCATCTGGTCCTTCGTCTGCGTGGTGG 33589 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| ||||| || || || || || | || || || ||| || Sbjct 34201 ATGCAAATCTTCGTGAAGACTCTCACCGGAAAGACCATAACCCTAGAAGTTGAGAGCTCC 34260 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || ||||| |||||| |||| ||| | Sbjct 34261 GACACCATCGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGACC 34318 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || |||||||||||||| |||| || | | | ||||||||| Sbjct 34319 AGCAGCGTCTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGGACCCTTGCCGATTACA 34378 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||| || || |||| | || | ||| || | | ||||| ||| Sbjct 34379 ATATCCAGAAGGAATCCACTCTCCACCTTGTTCTGAGGCTTCGTGGAGGC 34428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355841629757403