Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq38 93.3 4e-14 seq3 82.4 7e-11 >seq12 Length=19346091 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | ||||||||| || || || || || ||||| || || Sbjct 17399656 CATGCCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTC 17399597 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| || || | | | || || | || ||||| ||||| || |||||||||||||| | Sbjct 17399596 GGCGAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGG 17399537 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || || |||||| || || ||||| ||| | | | || ||| || Sbjct 17399536 AGGGATGCCTTCCTTGTCCTGAATCTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCT 17399478 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | ||||| |||| ||| || |||||||||||||| Sbjct 17399477 CGACCTCCAGAGTGATCGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 17399426 >seq38 Length=323574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || || || || ||||| || ||||| Sbjct 34655 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 34596 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | | || || | || ||||| ||||| || |||||||||||||| | || Sbjct 34595 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 34536 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || || |||||| || || ||||| ||| | | | || ||| ||| || Sbjct 34535 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCGAC 34477 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| |||| ||| || |||||||||||||| Sbjct 34476 CTCCAGAGTGATTGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 34429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || || || || ||||| || ||||| Sbjct 52921 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 52862 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | | || || | || ||||| ||||| || |||||||||||||| | || Sbjct 52861 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 52802 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || || |||||| || || ||||| ||| | | | || ||| ||| || Sbjct 52801 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCGAC 52743 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| |||| ||| || |||||||||||||| Sbjct 52742 CTCCAGAGTGATTGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 52695 >seq3 Length=26737297 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| ||||| || || || ||||||| | || || ||||| || || |||||| Sbjct 2107234 TCCTTTTGGATATTGTAGTCAGCTAGTGTTCTACCATCCTCCAGCTGCTTTCCAGCAAAT 2107175 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGT 39212 ||||| | |||||| || | || | | ||| |||||| ||| | | || |||| | Sbjct 2107174 ATAAGTCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCC-TGAATCTTTGCCTTGACGTT 2107116 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| |||||| || | |||||| | ||||| |||| || || || Sbjct 2107115 ATCTATGGTATCAGAACTCTCCACCTCAAGTGTGATAGTCTTTCCAGTCAAAGTCTTGAC 2107056 Query 39273 AAAGATTTGCAT 39284 |||||||||||| Sbjct 2107055 AAAGATTTGCAT 2107044 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| ||||| || || || ||||||| | || || ||||| || || |||||| Sbjct 2755220 TCCTTTTGGATATTGTAGTCAGCTAGTGTTCTACCATCCTCCAGCTGCTTTCCAGCAAAT 2755279 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGT 39212 ||||| | |||||| || | || | | ||| |||||| ||| | | || |||| | Sbjct 2755280 ATAAGCCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCC-TGAATCTTTGCCTTGACGTT 2755338 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| |||||| || | |||||| | ||||| |||| || || || Sbjct 2755339 ATCTATGGTATCAGAACTCTCCACCTCAAGTGTGATAGTCTTTCCAGTCAAAGTCTTGAC 2755398 Query 39273 AAAGATTTGCAT 39284 |||||||||||| Sbjct 2755399 AAAGATTTGCAT 2755410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429520529168357