Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 149 9e-31 seq2164 102 1e-16 seq8 95.1 2e-14 seq5 89.7 7e-13 >seq9 Length=25348792 Score = 149 bits (164), Expect = 9e-31 Identities = 387/583 (66%), Gaps = 8/583 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || || || || || | ||| || |||| || || ||||| || || ||| Sbjct 24571347 AAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTG 24571288 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA-GAAAA 48256 || |||||||| | || || || || ||||||||||| || || ||| ||| ||||| Sbjct 24571287 AGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCGC-GCAGAAGCTCCCCGAAAA 24571229 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT- 48315 ||| || || || ||| || || || | | ||| || ||| | |||| || Sbjct 24571228 GAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCG-AAC--GATTCGGTGCC 24571172 Query 48316 GT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||||| | ||||| || |||||||| |||||||| | || || || || Sbjct 24571171 GTCGATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGC 24571112 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 || || || ||| || || ||||| | || || || | || || ||||| Sbjct 24571111 ATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTATA 24571052 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||||||||| ||||| || || || ||||| || || || ||| | || |||| Sbjct 24571051 CATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGC 24570992 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 || ||| |||||| | || | | || | |||||| || || || || || Sbjct 24570991 GACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGC 24570932 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 |||||| || || | ||||| ||| || | || |||| || || || || | ||| Sbjct 24570931 AGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCA 24570872 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || | | ||| | || | || || || || || ||||| || || ||||| ||||| Sbjct 24570871 GTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTT 24570812 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 || ||||| | ||| || | ||||||||| || || ||| Sbjct 24570811 CTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACATA 24570769 >seq2164 Length=5404 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || |||||||||||| || || || ||||||||| || ||||| || |||| || Sbjct 3592 CTGTCTTTCATATTGGGTGTAGAGATTTTCAAATTCTTCACCCCAGCATTCTGCCAACCC 3651 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || | ||||| ||||| | ||||||||||| |||| | |||| || ||| || Sbjct 3652 TGGAGACTCATTAGGGCAAAACAATGACCAGTGTCCATTAGATTGGACTCTTTCCATGAA 3711 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || |||||| | ||| ||||||| ||||||||| || | | |||||||| Sbjct 3712 GATATCAGGCACCCAAAGAGCAAAAAATAGATCACGTGCCCGGTGTTCTTC 3762 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| || | |||||||| ||| || Sbjct 4122 CCCCCTTGATCAACATAACGAGCAGTATCATTGAAAACCCTTAGCATTGGAACAATGCCA 4181 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| ||||||||| || | || || ||||| | ||| Sbjct 4182 TTCGATGTCCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATATTTTGAGCTGAT 4241 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||| || || || || Sbjct 4242 ACACCAATTCCTCCTGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTGTCATATATG 4301 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||| | ||| || || ||| Sbjct 4302 CCTTCAATGCTATCATCTTTCATGCACACAAGGAAGCAACTA 4343 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 |||||||||||||| | || ||||| ||||| || ||||| | ||| | | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | ||| | || || || || | ||| ||||| || || | || | ||| || Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| |||||||| ||| | || ||| || | ||| || | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || ||||||||||| || | ||| ||| || || || || || || Sbjct 4646 GGTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCATAGATTAT 4693 >seq8 Length=23350829 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||| ||| || | || ||||| ||||| || ||||| | || | | | | Sbjct 17135912 GTTCCTGAATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGGGACATCAAGTGG 17135853 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| ||||| || || || || | |||| ||||||| || || | ||||||| Sbjct 17135852 TATGTTTTGATAGCAGAATCAATATCATCCTTATGAGTTCCTACAGCAACCCTCATCAAC 17135793 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||| ||||| |||||||| ||| | || ||| || | ||| || | || | Sbjct 17135792 ATATGTTGAGGCCTTTCAACAACCTTCCCCTGTACTTTTAAGAGGTAGGACCTCTCAAGG 17135733 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || || |||||||| || | || |||||| || |||||||| || Sbjct 17135732 GTCTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 17135686 >seq5 Length=31365312 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 |||||||||||||| | || ||||| ||||| || ||||| | ||| | | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | ||| | || || || || | ||| ||||| || || | || | ||| || Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| |||||||| ||| | || ||| || | ||| || | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || ||||||||||| || | ||| ||| || || || || || || Sbjct 24811734 GGTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCATAGATTAT 24811687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694627215388960