Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 seq2164 122 1e-22 seq8 113 6e-20 seq5 102 1e-16 seq7 86.0 9e-12 >seq9 Length=25348792 Score = 131 bits (144), Expect = 2e-25 Identities = 361/545 (66%), Gaps = 10/545 (2%) Strand=Plus/Minus Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA 46725 || || ||||| || || |||||||| ||||| | || ||||| || ||||||||||| Sbjct 24571308 ATCAACTCGTTCGAGAAAGTGAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATC 24571249 Query 46726 GCCGCGAAAGATCCA-GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 || || ||| ||| |||||||| || || || || ||||| || || | | ||| Sbjct 24571248 GC-GCAGAAGCTCCCCGAAAAGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTC 24571190 Query 46785 TCCGTAACTGGCATCATTA---TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841 || ||| | || | | ||||||| | ||||| || ||||| || || Sbjct 24571189 CGCG-AAC--GATTCGGTGCCGTCGATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCAC 24571133 Query 46842 ACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATA 46901 |||||| | || || || |||| || || ||| || || | ||||| | ||| Sbjct 24571132 ACAAGGGACGGTCTCGATGGCATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATA 24571073 Query 46902 TGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCC 46961 || || | || || ||||||||||| || || || || || || || ||||| || || Sbjct 24571072 GGTTTCGAGCAAGAGGCTATACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCC 24571013 Query 46962 GTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCT 47020 || ||| | || || | | ||| ||||| | || | | | | | | | ||||| Sbjct 24571012 ATAGAAAGCGCGAGCCTCTGCGACCTGAACCTCCTT-CATGAACCTCCCGGCGAGATTCT 24570954 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 | || || || || |||||||| || || | ||||| ||| || | || | Sbjct 24570953 CCAAAACGATGCCGTCTGAGGCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCT 24570894 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 | |||| || || || | ||||| | | ||| | || | || || || || || | Sbjct 24570893 CGTCGGGGGTTAGGTTTTCCCAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGG 24570834 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAA 47200 ||||||| || ||||| ||||| || ||||| | ||| || | | ||||||||||||| Sbjct 24570833 TCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAA 24570774 Query 47201 AAATA 47205 | ||| Sbjct 24570773 ACATA 24570769 >seq2164 Length=5404 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| || | |||||||| |||||| Sbjct 4122 CCCCCTTGATCAACATAACGAGCAGTATCATTGAAAACCCTTAGCATTGGAACAATGCCA 4181 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| ||||||||| || ||||| ||||| | ||| Sbjct 4182 TTCGATGTCCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATATTTTGAGCTGAT 4241 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| || ||| | |||||| ||||| |||||||| ||| Sbjct 4242 ACACCAATTCCTCCTGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTGTCATATATG 4301 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||| | ||| || || ||| Sbjct 4302 CCTTCAATGCTATCATCTTTCATGCACACAAGGAAGCAACTA 4343 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 |||||||||||||| | || ||||| |||||||||||||| | ||| | | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | ||||| | || ||||| | ||| ||||| || |||| || | ||| || Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| | || ||| || | ||| || | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || ||||||||||| || | ||| ||| || || || || || || Sbjct 4646 GGTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCATAGATTAT 4693 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || |||||||||||| || || | ||||||||| || ||||| || |||| || Sbjct 3592 CTGTCTTTCATATTGGGTGTAGAGATTTTCAAATTCTTCACCCCAGCATTCTGCCAACCC 3651 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| | ||||| || || | ||||||||| | |||| | || | || ||| || Sbjct 3652 TGGAGACTCATTAGGGCAAAACAATGACCAGTGTCCATTAGATTGGACTCTTTCCATGAA 3711 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 || |||||| | ||| ||||||| ||||||||| || Sbjct 3712 GATATCAGGCACCCAAAGAGCAAAAAATAGATCACG 3747 >seq8 Length=23350829 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | || || | ||| |||| || | |||||||| |||||| Sbjct 17136277 CCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCCA 17136218 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| ||||||||| || |||||||||||| ||| || Sbjct 17136217 TTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGAG 17136158 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || || ||| | |||||| ||||| || ||||| ||| Sbjct 17136157 ACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATATG 17136098 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||| | ||| || || ||| Sbjct 17136097 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAACTA 17136056 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||| ||| || | || ||||| |||||||||||||| | || | | | | Sbjct 17135912 GTTCCTGAATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGGGACATCAAGTGG 17135853 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| ||| | | || ||||| | |||| |||||||||| || | ||||||| Sbjct 17135852 TATGTTTTGATAGCAGAATCAATATCATCCTTATGAGTTCCTACAGCAACCCTCATCAAC 17135793 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||| ||||| | ||| ||| ||| | || ||| || | ||| || | || | Sbjct 17135792 ATATGTTGAGGCCTTTCAACAACCTTCCCCTGTACTTTTAAGAGGTAGGACCTCTCAAGG 17135733 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || |||||||| || | || |||||| || |||||||| || Sbjct 17135732 GTCTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 17135686 >seq5 Length=31365312 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 |||||||||||||| | || ||||| |||||||||||||| | ||| | | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | ||||| | || ||||| | ||| ||||| || |||| || | ||| || Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| | || ||| || | ||| || | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || ||||||||||| || | ||| ||| || || || || || || Sbjct 24811734 GGTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCATAGATTAT 24811687 >seq7 Length=27644224 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 |||||| | ||| ||||||||||| || ||||| ||||||||| ||| | || || | Sbjct 22709641 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22709698 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||||| || |||||||| | || | |||||| ||||||||||| || Sbjct 22709699 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGGC 22709747 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 |||||| | ||| ||||||||||| || ||||| ||||||||| ||| | || || | Sbjct 22995875 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22995818 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||||| || |||||||| | || | |||||| ||||||||||| || Sbjct 22995817 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGGC 22995769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712891721964480