Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 107 4e-18
seq55038 100 6e-16
>seq17655
Length=1090806
Score = 107 bits (118), Expect = 4e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317
||||||| | || | ||||| || ||||||||||| ||||| || || || | |||||
Sbjct 172840 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 172781
Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377
||| ||||| ||||||| | |||||||| ||| | | | |||||| | ||| |
Sbjct 172780 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 172721
Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437
||| ||||| |||| |||||||| ||||| | || | || |||| |||||||
Sbjct 172720 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 172661
Query 157438 GGGAAGCGC 157446
||| |||||
Sbjct 172660 GGGCAGCGC 172652
>seq55038
Length=538077
Score = 100 bits (110), Expect = 6e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867
||| || || ||||||||||||| ||| || ||||| |||| || ||| | || ||| |
Sbjct 91128 AGACTTCGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATTTACTGAAAGT 91187
Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927
|| ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| ||
Sbjct 91188 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 91247
Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987
||||||||| || ||| | || | || ||| | ||| | | |||||| | ||
Sbjct 91248 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 91307
Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020
||||| | || || || ||||| || || ||
Sbjct 91308 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 91340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1072823479417984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |