Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq17655 107 4e-18 seq55038 100 6e-16 >seq17655 Length=1090806 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 172840 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 172781 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||||| ||| | | | |||||| | ||| | Sbjct 172780 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 172721 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| ||||| |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 172720 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 172661 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 172660 GGGCAGCGC 172652 >seq55038 Length=538077 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || ||||| |||| || ||| | || ||| | Sbjct 91128 AGACTTCGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATTTACTGAAAGT 91187 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 91188 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 91247 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 91248 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 91307 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 91308 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 91340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072823479417984