Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq56172 82.4 6e-11 >seq56172 Length=445662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || || ||| | |||||||| || || ||| | || || || || Sbjct 373180 ATGCAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCA 373239 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| || || | || || ||| | || |||||| Sbjct 373240 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 373299 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| ||||| || || || ||| | ||| || || |||| | Sbjct 373300 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCGGACTACAAC 373359 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCA 25061 || ||||| ||| |||| ||||| || ||| | || ||||||| || || Sbjct 373360 ATCCAGAAGGAGTCCACACTTCACTTGGTGCTCCGTCTGCGCGGTGGCCA 373409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417954587792960