Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq16495 104 2e-17 >seq16495 Length=532983 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| |||| ||| ||| || || | |||||||| | Sbjct 85662 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC 85603 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT-CGGCCG 43000 | ||| || | || || | ||||||||||||||| ||||| ||||| || | ||| | Sbjct 85602 AAGTGTGCGCCCATCCTCAAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGGG 85543 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||||| || | | |||||| || ||| | Sbjct 85542 GGATGCCCTCCTTGTCCTAGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCAA 85483 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || ||||| || ||||||||||| |||||||| Sbjct 85482 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381051039351204