Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq59033 86.0 6e-12 seq16495 86.0 6e-12 seq58488 84.2 2e-11 >seq59033 Length=364465 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || |||||||| | |||| ||| || ||||| || || Sbjct 26252 GTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTGCGTCCGTCCTCAAGTTGCTTGCCG 26311 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| || ||||| || || || ||||| || ||||| || ||| || Sbjct 26312 GCAAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 26371 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || |||| || | ||||||||||||||||| Sbjct 26372 ACATTGTCGATCGTGTCGGATGACTCAACCTCAAGTGTGATGGTCTTGCCGGTCAATGTC 26431 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 26432 TTGACGAAGATCTGCAT 26448 >seq16495 Length=532983 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| || || | || || ||||| || ||||||||||| Sbjct 85662 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC 85603 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGAT-CGGGAG 143075 | ||||| | || || |||||||| || ||| |||||| || ||||| | |||| | Sbjct 85602 AAGTGTGCGCCCATCCTCAAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGGG 85543 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||| || ||||| || || ||| | | || | |||||| | | || | Sbjct 85542 GGATGCCCTCCTTGTCCTAGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCAA 85483 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | ||||||||||| | ||||| || || |||||||| Sbjct 85482 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434 >seq58488 Length=2025148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | || | || || |||| || || || || || |||||||| || Sbjct 706528 TGGCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCC 706469 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || |||| || ||||| || ||||||||| |||||||||| ||||| || || Sbjct 706468 GCCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGT 706409 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || ||||| || || || | | || | ||||||| | || Sbjct 706408 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGATGACTCG 706349 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || |||| || | ||||||||||| | || || ||||| || |||||| Sbjct 706348 ACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 706298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506580028088160