Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 156 6e-33
>seq17655
Length=1090806
Score = 156 bits (172), Expect = 6e-33
Identities = 579/893 (65%), Gaps = 42/893 (5%)
Strand=Plus/Plus
Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052
|| |||| |||||| ||| | | || ||||| | ||||| ||||| ||| ||||
Sbjct 171975 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 172034
Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112
| ||||| | ||| ||||| || || ||| ||| | | | ||||| || |
Sbjct 172035 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCT-- 172092
Query 125113 CTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170
|| ||| ||||| | || || || ||| | | |||||||| |||| |||||| ||
Sbjct 172093 CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGG 172152
Query 125171 AATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGT 125229
||||| || || || | | ||| | || || || | | ||||
Sbjct 172153 CATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCCA 172211
Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289
| ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| |
Sbjct 172212 GGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTGC 172271
Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATC 125345
| || || | ||||| ||||| | |||| || || ||||| ||| |||
Sbjct 172272 TCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATC 172327
Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405
||||| | || | | || ||||| | |||| | || |||||||| | ||
Sbjct 172328 GACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGG 172387
Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TT 125463
|| ||||| |||| | | || || |||||| ||| |||||||||||||| |
Sbjct 172388 GAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTC 172443
Query 125464 CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523
||| | || ||| |||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 172444 CGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCT 172502
Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583
| |||||| | || || || ||||||||||| ||||| ||||| ||| || || |
Sbjct 172503 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCT 172562
Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCA-GA-TCCAGCGATGAAAAGGTCATCAACATTG 125640
| || ||||| | || || | || ||| || ||| || | || |
Sbjct 172563 ---ACGACATCCTGCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCG 172610
Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700
| |||| |||||| || || ||||| | ||| | || || | |
Sbjct 172611 TCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCG 172670
Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760
| ||||||||| || | || ||| || ||||||| ||||| ||||| || || || ||
Sbjct 172671 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-- 172728
Query 125761 ACGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817
| | | | ||| |||||| | |||||||||| || || || || | |||
Sbjct 172729 -CATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGC 172787
Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
||| || || |||| ||||||||||| ||||||||| ||| ||||||||
Sbjct 172788 TCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 172840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740424316056880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |