Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17655 156 6e-33 >seq17655 Length=1090806 Score = 156 bits (172), Expect = 6e-33 Identities = 579/893 (65%), Gaps = 42/893 (5%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 171975 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 172034 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || | Sbjct 172035 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCT-- 172092 Query 125113 CTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || ||| ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 172093 CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGG 172152 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| || || || | | ||| | || || || | | |||| Sbjct 172153 CATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCCA 172211 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| | Sbjct 172212 GGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTGC 172271 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATC 125345 | || || | ||||| ||||| | |||| || || ||||| ||| ||| Sbjct 172272 TCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATC 172327 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 ||||| | || | | || ||||| | |||| | || |||||||| | || Sbjct 172328 GACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGG 172387 Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TT 125463 || ||||| |||| | | || || |||||| ||| |||||||||||||| | Sbjct 172388 GAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTC 172443 Query 125464 CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || ||| |||||||| ||||||||||||||||| |||||||| || || || Sbjct 172444 CGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCT 172502 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || | Sbjct 172503 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCT 172562 Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCA-GA-TCCAGCGATGAAAAGGTCATCAACATTG 125640 | || ||||| | || || | || ||| || ||| || | || | Sbjct 172563 ---ACGACATCCTGCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCG 172610 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700 | |||| |||||| || || ||||| | ||| | || || | | Sbjct 172611 TCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCG 172670 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | ||||||||| || | || ||| || ||||||| ||||| ||||| || || || || Sbjct 172671 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-- 172728 Query 125761 ACGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | | | | ||| |||||| | |||||||||| || || || || | ||| Sbjct 172729 -CATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGC 172787 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 172788 TCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 172840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740424316056880