Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq16495 87.8 1e-12 seq35365 84.2 2e-11 >seq16495 Length=532983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || |||||||| ||||| || ||||||||||| || | | | | || || Sbjct 85644 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGCCCATCCTC 85585 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGT-CGTTTGGAATTCCTTCTTTGTCAC 15272 | ||||||||| || | ||||| || || |||| || || || || || ||||| Sbjct 85584 AAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGGGGGATGCCCTCCTTGTCCT 85525 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 | || || ||| || ||| | || || || ||| | || || || | ||| ||||| Sbjct 85524 AGATCTTCGCT-TTGACATTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 85466 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 85465 TTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434 >seq35365 Length=683187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || |||||||| ||| || | | |||| || | || Sbjct 660945 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGC 661004 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| || || ||||| ||||| || || ||||| || ||| Sbjct 661005 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 661064 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| | || || || | || ||||| || || || Sbjct 661065 GCCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCGGTG 661124 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| |||||| Sbjct 661125 AGGGTCTTCACAAAAATCTGCATA 661148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361876669224258