Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq16495 87.8 1e-12
seq35365 84.2 2e-11
>seq16495
Length=532983
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || || |||||||| ||||| || ||||||||||| || | | | | || ||
Sbjct 85644 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGCCCATCCTC 85585
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGT-CGTTTGGAATTCCTTCTTTGTCAC 15272
| ||||||||| || | ||||| || || |||| || || || || || |||||
Sbjct 85584 AAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGGGGGATGCCCTCCTTGTCCT 85525
Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
| || || ||| || ||| | || || || ||| | || || || | ||| |||||
Sbjct 85524 AGATCTTCGCT-TTGACATTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 85466
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || ||||| ||||| ||||||||
Sbjct 85465 TTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434
>seq35365
Length=683187
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| ||||| || |||||||| ||| || | | |||| || | ||
Sbjct 660945 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGC 661004
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|||||||| | |||| || || ||||| ||||| || || ||||| || |||
Sbjct 661005 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 661064
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || ||||| ||| | || || || | || ||||| || || ||
Sbjct 661065 GCCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCGGTG 661124
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
|| || || |||||||| ||||||
Sbjct 661125 AGGGTCTTCACAAAAATCTGCATA 661148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361876669224258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |