Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq16568 91.5 1e-13
seq16495 87.8 1e-12
seq56172 86.0 5e-12
seq17562 86.0 5e-12
seq14904 86.0 5e-12
seq38869 82.4 6e-11
>seq16568
Length=483573
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||||| ||||||||||| |||||||| ||||| |||| || | | |||||
Sbjct 114681 CACCAGGTGCAGAGTAGACTCCTTCTGAATATTATAATCAGCCAGAGTGTGACCATCCTC 114622
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | || || | |||||| ||| ||| | |||||| |||||
Sbjct 114621 GAGCTGCTTACCGGCAAAGATTAGGCACTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTG 114562
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | || || || |||| ||| | ||| || || ||
Sbjct 114561 GATGTTCACCTTCACGTTGTCAATGGTGTCCGAAGACTCCACTTCCAGGGTGATAGTCTT 114502
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
| || | || ||| | ||||| |||||
Sbjct 114501 GCTAGTGAGGGTCTTGTCGAAAATCTGCAT 114472
>seq16495
Length=532983
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| || ||||| |||| || | |||||
Sbjct 85871 CACCAGGTGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGTGCGACCATCCTC 85812
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | || || | ||||| ||| ||| | |||||| |||||
Sbjct 85811 AAGCTGCTTACCAGCAAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 85752
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | ||| || || || ||| ||| | ||| ||||| ||
Sbjct 85751 GATCTTCGCCTTCACGT-GTCGATGGTGTCTGAAGATTCCACTTCCAGGGTGATGGTCTT 85693
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || |||||||| || |||||
Sbjct 85692 GCCAGTCAATGTCTTGACAAAGATCTGCAT 85663
>seq56172
Length=445662
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || || | ||| | ||| | ||| | || ||||||||||| || ||||| |||||
Sbjct 386644 CCACCACGGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGCA 386585
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||| ||||| ||||| ||| | ||||| | |||||| ||| |||
Sbjct 386584 AGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATAAGACGCTGCTGGTCCGGGGGG 386525
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| |||||| ||||| || ||| || || | | ||| || || | |||
Sbjct 386524 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGACC 386465
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||| ||||| || || || | || ||||| ||||| |||||
Sbjct 386464 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 386418
>seq17562
Length=36101
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| || || ||||| || |||| || | | |||||
Sbjct 6930 CACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 6871
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||| || || ||| | || || | |||||| ||| ||| | ||||| |||||
Sbjct 6870 CAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 6811
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTT 19010
|| || || || | | ||| || || | ||| |||| || | ||| ||||| |
Sbjct 6810 GATCTTGGCCTTCACATTGTCGATGGTGTC-CGAGGACTCCACCTCCAGGGTGATGGTCT 6752
Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
| || || | || ||||||||||| |||||
Sbjct 6751 TGCCGGTGAGCGTCTTGACAAAAATCTGCAT 6721
>seq14904
Length=321791
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| || | ||||||||||| ||||| ||||||||||||| || | |||||
Sbjct 31376 CACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGACCATCCTC 31317
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || |||||| | || | |||||||| ||| || | |||||| |||||
Sbjct 31316 AAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 31257
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | ||||| || ||| || | ||||||||| ||
Sbjct 31256 GATCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACCTCTAGGGTAATGGTCTT 31197
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||||| || || || |||||
Sbjct 31196 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 31167
>seq38869
Length=164459
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | ||||| ||||||||||| |||||||||||||| |||| || | ||||
Sbjct 42629 CACTAGGTGCAGAGTAGACTCCTTCTGAATATTGTAATCAGCCAGAGTACGACCATCCTT 42688
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | || || | |||||| ||| ||| | ||||| |||||
Sbjct 42689 GAGCTGCTTACCGGCAAAGATTAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 42748
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | || || || |||| ||| | ||| || || |
Sbjct 42749 GATCTTCGCCTTCACATTGTCAATGGTGTCCAAAGACTCCACTTCCAGGGTGATAGTCAT 42808
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || ||||| ||||| |||||
Sbjct 42809 GCCAGTAAGGGTCTTGACGAAAATCTGCAT 42838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414226504489972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |