Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq16568 91.5 1e-13 seq16495 87.8 1e-12 seq56172 86.0 5e-12 seq17562 86.0 5e-12 seq14904 86.0 5e-12 seq38869 82.4 6e-11 >seq16568 Length=483573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| |||||||| ||||| |||| || | | ||||| Sbjct 114681 CACCAGGTGCAGAGTAGACTCCTTCTGAATATTATAATCAGCCAGAGTGTGACCATCCTC 114622 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 114621 GAGCTGCTTACCGGCAAAGATTAGGCACTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTG 114562 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || |||| ||| | ||| || || || Sbjct 114561 GATGTTCACCTTCACGTTGTCAATGGTGTCCGAAGACTCCACTTCCAGGGTGATAGTCTT 114502 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || | || ||| | ||||| ||||| Sbjct 114501 GCTAGTGAGGGTCTTGTCGAAAATCTGCAT 114472 >seq16495 Length=532983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| || ||||| |||| || | ||||| Sbjct 85871 CACCAGGTGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGTGCGACCATCCTC 85812 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | ||||| ||| ||| | |||||| ||||| Sbjct 85811 AAGCTGCTTACCAGCAAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 85752 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || ||| ||| | ||| ||||| || Sbjct 85751 GATCTTCGCCTTCACGT-GTCGATGGTGTCTGAAGATTCCACTTCCAGGGTGATGGTCTT 85693 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || ||||| Sbjct 85692 GCCAGTCAATGTCTTGACAAAGATCTGCAT 85663 >seq56172 Length=445662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||| | ||| | || ||||||||||| || ||||| ||||| Sbjct 386644 CCACCACGGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGCA 386585 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| ||||| ||| | ||||| | |||||| ||| ||| Sbjct 386584 AGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATAAGACGCTGCTGGTCCGGGGGG 386525 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||| || || | | ||| || || | ||| Sbjct 386524 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGACC 386465 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || ||||| ||||| ||||| Sbjct 386464 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 386418 >seq17562 Length=36101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || ||||| || |||| || | | ||||| Sbjct 6930 CACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 6871 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| ||| | ||||| ||||| Sbjct 6870 CAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 6811 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTT 19010 || || || || | | ||| || || | ||| |||| || | ||| ||||| | Sbjct 6810 GATCTTGGCCTTCACATTGTCGATGGTGTC-CGAGGACTCCACCTCCAGGGTGATGGTCT 6752 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || ||||||||||| ||||| Sbjct 6751 TGCCGGTGAGCGTCTTGACAAAAATCTGCAT 6721 >seq14904 Length=321791 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||||||||| ||||| ||||||||||||| || | ||||| Sbjct 31376 CACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGACCATCCTC 31317 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || |||||| | || | |||||||| ||| || | |||||| ||||| Sbjct 31316 AAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 31257 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | ||||| || ||| || | ||||||||| || Sbjct 31256 GATCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACCTCTAGGGTAATGGTCTT 31197 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||| || || || ||||| Sbjct 31196 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 31167 >seq38869 Length=164459 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||||| ||||||||||| |||||||||||||| |||| || | |||| Sbjct 42629 CACTAGGTGCAGAGTAGACTCCTTCTGAATATTGTAATCAGCCAGAGTACGACCATCCTT 42688 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | ||||| ||||| Sbjct 42689 GAGCTGCTTACCGGCAAAGATTAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 42748 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || |||| ||| | ||| || || | Sbjct 42749 GATCTTCGCCTTCACATTGTCAATGGTGTCCAAAGACTCCACTTCCAGGGTGATAGTCAT 42808 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| ||||| ||||| Sbjct 42809 GCCAGTAAGGGTCTTGACGAAAATCTGCAT 42838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414226504489972