Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq16483 116 3e-21 seq5346 102 7e-17 >seq16483 Length=155004 Score = 116 bits (128), Expect = 3e-21 Identities = 176/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 70610 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 70669 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 70670 GCGACGTCCGG---CGTGGCGATCCTCTCGATGACCAGCTGCGCGACGCGGTCCCCGGGC 70726 Query 5618 TTTACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 | || |||| ||| | | |||| |||||| || | || || ||| ||| |||| Sbjct 70727 CTCACGGCGAAGTCG--GCGTCCGAGTGGTTGAAGAGGATGACCCCGACGGGGCCCCGGT 70784 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 70785 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 70844 Query 5736 GGGGAGC 5742 | || || Sbjct 70845 GCGGCGC 70851 >seq5346 Length=111403 Score = 102 bits (112), Expect = 7e-17 Identities = 167/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| || || | || | | || |||| ||| | ||||||| Sbjct 97577 ACGCCGGTGGACCCGAACCCTCCCTCCCCGCGGACGGTGGCGTCAAGGTCCTCCACCTCG 97636 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | || | |||| ||| || | ||||| || | ||| Sbjct 97637 GCGACCTCCGGCGTCGCGATCAC-CTGGATAATCATCTGGGCGACGCGGTCCCCAGGCTT 97695 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || | |||| |||||| ||||| |||||||| ||| |||||| Sbjct 97696 CACGACGAAGTCCACCT--CCGAGTGGTTGAAGAGCACGACGCCCACAGGGCCACGGTAG 97753 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||| || |||||| |||||||| |||||| | ||||||||| || Sbjct 97754 TCGGCGTCGATCACCCCGGCGCCCGCGTCGATGGCGTGCTTCAGCGCCAGGCCCGA 97809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429695172603056