Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq16483 116 3e-21
seq5346 102 7e-17
>seq16483
Length=155004
Score = 116 bits (128), Expect = 3e-21
Identities = 176/247 (71%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| ||||||||||| ||||| |||| || | || |||| ||| |||||||
Sbjct 70610 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 70669
Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617
| || || || || ||| | |||| || ||||||||| | ||||| || | |
Sbjct 70670 GCGACGTCCGG---CGTGGCGATCCTCTCGATGACCAGCTGCGCGACGCGGTCCCCGGGC 70726
Query 5618 TTTACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675
| || |||| ||| | | |||| |||||| || | || || ||| ||| ||||
Sbjct 70727 CTCACGGCGAAGTCG--GCGTCCGAGTGGTTGAAGAGGATGACCCCGACGGGGCCCCGGT 70784
Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735
|||||||||| | ||||||||||||||||||||| ||||||| |||||| || || |
Sbjct 70785 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 70844
Query 5736 GGGGAGC 5742
| || ||
Sbjct 70845 GCGGCGC 70851
>seq5346
Length=111403
Score = 102 bits (112), Expect = 7e-17
Identities = 167/236 (71%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| ||||||||||| || || | || | | || |||| ||| | |||||||
Sbjct 97577 ACGCCGGTGGACCCGAACCCTCCCTCCCCGCGGACGGTGGCGTCAAGGTCCTCCACCTCG 97636
Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| || || || ||| | | | || | |||| ||| || | ||||| || | |||
Sbjct 97637 GCGACCTCCGGCGTCGCGATCAC-CTGGATAATCATCTGGGCGACGCGGTCCCCAGGCTT 97695
Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677
|| |||| || | |||| |||||| ||||| |||||||| ||| ||||||
Sbjct 97696 CACGACGAAGTCCACCT--CCGAGTGGTTGAAGAGCACGACGCCCACAGGGCCACGGTAG 97753
Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733
|||||||| ||||| || |||||| |||||||| |||||| | ||||||||| ||
Sbjct 97754 TCGGCGTCGATCACCCCGGCGCCCGCGTCGATGGCGTGCTTCAGCGCCAGGCCCGA 97809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429695172603056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |