Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq55038 86.0 2e-11 >seq55038 Length=538077 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| |||||| ||| ||||| || | ||| || || | | Sbjct 91448 TGCTTTCTTGTCTGCATGAAAGACGATAGCATTGAGGGAATTTATGATACTCTCTCGGAA 91507 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || ||| || ||| ||| || || |||||||| || || ||||| ||||| || Sbjct 91508 TGCGCTTCCATAAGCAAATCTGCTGGAGGGATTGGTGTCTCAATTCACAACGTTCGGGCT 91567 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | |||||||||||| || || ||| || ||||| | || |||||||| || Sbjct 91568 ACTGG-CAGTTACATTCGTGGAACTAATGGAACTTCTAATGGAATTGTACCCATGCTACG 91626 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || | | ||||| | || || || || || ||||| ||| | ||||| Sbjct 91627 TGTTTTCAATGACACTGCACGCTATGTTGATCAAGGCGGAGGCAAGAGAAAAGG 91680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302209068996716