Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq36636 104 3e-17 seq66929 102 9e-17 seq66390 96.9 4e-15 seq63217 96.9 4e-15 seq18930 96.9 4e-15 seq68085 95.1 1e-14 seq19680 95.1 1e-14 seq28057 93.3 5e-14 seq7543 93.3 5e-14 seq66841 91.5 2e-13 seq36157 87.8 2e-12 seq37201 86.0 7e-12 seq58751 84.2 2e-11 seq55298 84.2 2e-11 seq22272 84.2 2e-11 seq59128 82.4 8e-11 seq14940 82.4 8e-11 >seq36636 Length=176699 Score = 104 bits (114), Expect = 3e-17 Identities = 89/108 (82%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 23537 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 23596 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT-ATTATTGGAATTTTTGTT 126369 |||||||| |||||||| |||||||||| || || | |||||| || Sbjct 23597 GTGGGTTCAAACCCCACTTCTGACAAATTAATGTTTTGCATTTTTCTT 23644 >seq66929 Length=337942 Score = 102 bits (112), Expect = 9e-17 Identities = 81/95 (85%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 202553 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 202612 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||| ||||| ||||||| || Sbjct 202613 GTGGGTTCGAACCCCACTTCTGAC-AATTATTTTT 202646 >seq66390 Length=862714 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/109 (81%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 725382 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 725323 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371 |||||||| |||||||| ||||| ||| ||| ||| |||| |||| Sbjct 725322 GTGGGTTCAAACCCCACTTCTGAC-AATAATTTTTGCTTTTTTCCTTGC 725275 >seq63217 Length=24468 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126257 CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT- 126315 ||| ||| ||||||| ||||||||||||||||||||||||| | ||| |||||| | || Sbjct 16062 CTAATTA-AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTT 16120 Query 126316 -CGGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 || | |||||||||| |||||||| ||||||| Sbjct 16121 ACGAGGGCGTGGGTTCAAACCCCACTTCTGACAA 16154 >seq18930 Length=424463 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 58744 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGG 58803 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| |||||||| |||||| ||| Sbjct 58804 CGTGGGTTCAAACCCCACTTCTGACATATT 58833 >seq68085 Length=218960 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 ||||||| |||||||||||||||||||||| |||| ||| || ||| | | | | | ||| Sbjct 188681 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCTGATTCAAGTTCAGGTCCTCGTTGAGGGCG 188622 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||| ||||||| Sbjct 188621 TGGGTTCGAACCCCACTCCTGACA 188598 >seq19680 Length=764883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 47440 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 47381 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||| ||| ||||| Sbjct 47380 GTGGGTTCAAACCCCACTTCTGAC--ATTCTTATT 47348 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 115598 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 115539 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||| | |||||| Sbjct 115538 TGGGTTCAAACCCCCCTTCTGACA 115515 >seq28057 Length=15508 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 8878 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 8937 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 8938 GTGGGTTCAAACCCCACTTCTGACA 8962 >seq7543 Length=35104 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 27379 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 27438 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 27439 GTGGGTTCAAACCCCACTTCTGACA 27463 >seq66841 Length=336965 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 140635 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 140576 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATTGGAATTTTT 126366 ||||||| |||||||| |||||| ||| || || | ||||| Sbjct 140575 TGGGTTCAAACCCCACTTCTGACATAATAATGTTTTGCTTTTTT 140532 >seq36157 Length=158142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 48920 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 48863 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| ||||||||| ||| |||| Sbjct 48862 GGGTTCAAACCCCACAGCTGTCAAA 48838 >seq37201 Length=82226 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 55874 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 55817 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| ||||||||| ||| || || || || | ||||||| Sbjct 55816 GGGTTCAAACCCCACAGCTGTCACATATTTTTTTG---TTTTGTT 55775 >seq58751 Length=662475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 506469 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 506526 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 506527 GGGTTCAAATCCCACAGCTGTCACATTTTT 506556 >seq55298 Length=540037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 240980 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 241037 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| || ||| || || Sbjct 241038 GGGTTCAAATCCCACAGCTGTCATATTTTTTTT 241070 >seq22272 Length=314602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 143551 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCAAAAGGGCGT 143494 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||| | || || Sbjct 143493 GGGTTCAAATCCCACAGCTGTCAAACTTTTTTT 143461 >seq59128 Length=1731726 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 58252 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 58195 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 58194 GGGTTCAAATCCCACATCTGTCAATTT 58168 >seq14940 Length=2087186 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 376662 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 376605 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 376604 TTCAAATCCCACAGCTGTCATATTTTT 376578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556383723431120