Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq36636 104 3e-17
seq66929 102 9e-17
seq66390 96.9 4e-15
seq63217 96.9 4e-15
seq18930 96.9 4e-15
seq68085 95.1 1e-14
seq19680 95.1 1e-14
seq28057 93.3 5e-14
seq7543 93.3 5e-14
seq66841 91.5 2e-13
seq36157 87.8 2e-12
seq37201 86.0 7e-12
seq58751 84.2 2e-11
seq55298 84.2 2e-11
seq22272 84.2 2e-11
seq59128 82.4 8e-11
seq14940 82.4 8e-11
>seq36636
Length=176699
Score = 104 bits (114), Expect = 3e-17
Identities = 89/108 (82%), Gaps = 3/108 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 23537 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 23596
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT-ATTATTGGAATTTTTGTT 126369
|||||||| |||||||| |||||||||| || || | |||||| ||
Sbjct 23597 GTGGGTTCAAACCCCACTTCTGACAAATTAATGTTTTGCATTTTTCTT 23644
>seq66929
Length=337942
Score = 102 bits (112), Expect = 9e-17
Identities = 81/95 (85%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 202553 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 202612
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||||||||||| ||||| ||||||| ||
Sbjct 202613 GTGGGTTCGAACCCCACTTCTGAC-AATTATTTTT 202646
>seq66390
Length=862714
Score = 96.9 bits (106), Expect = 4e-15
Identities = 88/109 (81%), Gaps = 3/109 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 725382 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 725323
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371
|||||||| |||||||| ||||| ||| ||| ||| |||| ||||
Sbjct 725322 GTGGGTTCAAACCCCACTTCTGAC-AATAATTTTTGCTTTTTTCCTTGC 725275
>seq63217
Length=24468
Score = 96.9 bits (106), Expect = 4e-15
Identities = 79/94 (84%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 126257 CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT- 126315
||| ||| ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||
Sbjct 16062 CTAATTA-AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTT 16120
Query 126316 -CGGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348
|| | |||||||||| |||||||| |||||||
Sbjct 16121 ACGAGGGCGTGGGTTCAAACCCCACTTCTGACAA 16154
>seq18930
Length=424463
Score = 96.9 bits (106), Expect = 4e-15
Identities = 76/90 (84%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321
|||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |
Sbjct 58744 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGG 58803
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351
||||||||| |||||||| |||||| |||
Sbjct 58804 CGTGGGTTCAAACCCCACTTCTGACATATT 58833
>seq68085
Length=218960
Score = 95.1 bits (104), Expect = 1e-14
Identities = 72/84 (86%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323
||||||| |||||||||||||||||||||| |||| ||| || ||| | | | | | |||
Sbjct 188681 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCTGATTCAAGTTCAGGTCCTCGTTGAGGGCG 188622
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
|||||||||||||||| |||||||
Sbjct 188621 TGGGTTCGAACCCCACTCCTGACA 188598
>seq19680
Length=764883
Score = 95.1 bits (104), Expect = 1e-14
Identities = 79/95 (83%), Gaps = 4/95 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 47440 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 47381
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||| |||||||| ||||| ||| |||||
Sbjct 47380 GTGGGTTCAAACCCCACTTCTGAC--ATTCTTATT 47348
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 115598 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 115539
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| |||||| | ||||||
Sbjct 115538 TGGGTTCAAACCCCCCTTCTGACA 115515
>seq28057
Length=15508
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/85 (85%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 8878 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 8937
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| |||||||| ||||||
Sbjct 8938 GTGGGTTCAAACCCCACTTCTGACA 8962
>seq7543
Length=35104
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/85 (85%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 27379 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 27438
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| |||||||| ||||||
Sbjct 27439 GTGGGTTCAAACCCCACTTCTGACA 27463
>seq66841
Length=336965
Score = 91.5 bits (100), Expect = 2e-13
Identities = 84/104 (81%), Gaps = 3/104 (3%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 140635 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 140576
Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATTGGAATTTTT 126366
||||||| |||||||| |||||| ||| || || | |||||
Sbjct 140575 TGGGTTCAAACCCCACTTCTGACATAATAATGTTTTGCTTTTTT 140532
>seq36157
Length=158142
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 48920 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 48863
Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349
|||||| ||||||||| ||| ||||
Sbjct 48862 GGGTTCAAACCCCACAGCTGTCAAA 48838
>seq37201
Length=82226
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/105 (79%), Gaps = 5/105 (5%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 55874 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 55817
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
|||||| ||||||||| ||| || || || || | |||||||
Sbjct 55816 GGGTTCAAACCCCACAGCTGTCACATATTTTTTTG---TTTTGTT 55775
>seq58751
Length=662475
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 506469 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 506526
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| || ||| ||
Sbjct 506527 GGGTTCAAATCCCACAGCTGTCACATTTTT 506556
>seq55298
Length=540037
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 240980 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 241037
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| || ||| || ||
Sbjct 241038 GGGTTCAAATCCCACAGCTGTCATATTTTTTTT 241070
>seq22272
Length=314602
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 143551 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCAAAAGGGCGT 143494
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| |||| | || ||
Sbjct 143493 GGGTTCAAATCCCACAGCTGTCAAACTTTTTTT 143461
>seq59128
Length=1731726
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 58252 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 58195
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 58194 GGGTTCAAATCCCACATCTGTCAATTT 58168
>seq14940
Length=2087186
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 376662 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 376605
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| || ||| ||
Sbjct 376604 TTCAAATCCCACAGCTGTCATATTTTT 376578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556383723431120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |