Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 389 7e-103
>seq17655
Length=1090806
Score = 389 bits (430), Expect = 7e-103
Identities = 601/845 (71%), Gaps = 25/845 (3%)
Strand=Plus/Plus
Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371
|||||||||||| | ||| |||||||||||||||| | ||||| || ||| ||
Sbjct 172013 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 172072
Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427
| |||||| | || ||| ||||| || ||| || || | || ||
Sbjct 172073 CGCCACTGGGACACCACCCTCTCC-AACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 172131
Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487
||||||||||||||| |||||||| || |||||||| ||| ||||||||||| ||
Sbjct 172132 CTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCCGA 172191
Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547
|||||| | ||||| | |||||||||||||||||| ||||| |||||| | ||
Sbjct 172192 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 172251
Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAA 42604
||| ||| ||||| || ||||||| | || ||||||| || ||||||| |
Sbjct 172252 CTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGA 172308
Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664
| | || ||| ||||| || || || ||| | | ||||| |||||||| ||
Sbjct 172309 CCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCT 172368
Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723
| ||||||||| | || ||| |||| |||| | | || ||||| || ||
Sbjct 172369 CCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 172424
Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783
||||||||||||||||||| ||| ||||| | ||||||||||||||||| || | |
Sbjct 172425 TCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGC 172484
Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843
||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | |
Sbjct 172485 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 172544
Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901
|||| ||||||||||| | ||| | ||| | |||| || || || || ||
Sbjct 172545 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCCCGCGT 172599
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961
| | ||| || | ||||||||||| ||||||| ||||||| || | |||||||
Sbjct 172600 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCC 172659
Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021
| | || |||||||||||| |||||||||| || |||||||| ||| ||| |||||
Sbjct 172660 CTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGA 172719
Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080
|| || || || | | |||| || || |||||| | | ||| |||||||
Sbjct 172720 CCGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACT 172778
Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140
|||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| |
Sbjct 172779 GGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 172838
Query 43141 ACCAG 43145
|||||
Sbjct 172839 ACCAG 172843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943530160998880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |