Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq17655 389 7e-103 >seq17655 Length=1090806 Score = 389 bits (430), Expect = 7e-103 Identities = 601/845 (71%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||||||||||||| | ||||| || ||| || Sbjct 172013 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 172072 Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427 | |||||| | || ||| ||||| || ||| || || | || || Sbjct 172073 CGCCACTGGGACACCACCCTCTCC-AACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 172131 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 172132 CTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCCGA 172191 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | || Sbjct 172192 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 172251 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||| ||||| || ||||||| | || ||||||| || ||||||| | Sbjct 172252 CTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGA 172308 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | | || ||| ||||| || || || ||| | | ||||| |||||||| || Sbjct 172309 CCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCT 172368 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | ||||||||| | || ||| |||| |||| | | || ||||| || || Sbjct 172369 CCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 172424 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 ||||||||||||||||||| ||| ||||| | ||||||||||||||||| || | | Sbjct 172425 TCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGC 172484 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | | Sbjct 172485 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 172544 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | ||| | ||| | |||| || || || || || Sbjct 172545 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCCCGCGT 172599 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | ||| || | ||||||||||| ||||||| ||||||| || | ||||||| Sbjct 172600 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCC 172659 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | | || |||||||||||| |||||||||| || |||||||| ||| ||| ||||| Sbjct 172660 CTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGA 172719 Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || || || || | | |||| || || |||||| | | ||| ||||||| Sbjct 172720 CCGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACT 172778 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| | Sbjct 172779 GGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 172838 Query 43141 ACCAG 43145 ||||| Sbjct 172839 ACCAG 172843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943530160998880