Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17655 172 1e-37 >seq17655 Length=1090806 Score = 172 bits (190), Expect = 1e-37 Identities = 311/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||||||| | ||||| || || || | || ||||| ||| Sbjct 172394 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC 172453 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 172454 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 172513 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | || Sbjct 172514 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTG 172573 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| || | || || || || | | Sbjct 172574 CGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATC 172630 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || ||| ||| | ||||||||| || ||| Sbjct 172631 GAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTC 172690 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 172691 ATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 172750 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| ||| ||||| || | || ||||||||||| ||||| || || || || Sbjct 172751 CTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 172810 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 172811 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 172842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101911513510300