Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 145 9e-30
seq58470 125 9e-24
seq55079 111 2e-19
>seq17655
Length=1090806
Score = 145 bits (160), Expect = 9e-30
Identities = 311/454 (69%), Gaps = 12/454 (3%)
Strand=Plus/Minus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || || || ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 172840 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 172781
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
| || || ||||| | | ||| | | || ||| || |||| | |||| ||
Sbjct 172780 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 172723
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | ||| |||| ||||||| ||| || |||||| |||| |||
Sbjct 172722 CGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 172663
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || |||||||| ||| |||| || |||| || |||||||| || ||||| ||
Sbjct 172662 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCG 172603
Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051
| | | | | |||| | | ||||| | ||| | || ||| || ||| ||
Sbjct 172602 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 172547
Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111
|| ||| || |||||||| ||||||||||| || || |||||| || || |||||
Sbjct 172546 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 172487
Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
||| || |||||||| | |||||| || || || || || || ||||||||||| |||||
Sbjct 172486 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 172427
Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205
|| || ||||| || | || ||||| || |||
Sbjct 172426 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393
>seq58470
Length=785708
Score = 125 bits (138), Expect = 9e-24
Identities = 361/547 (66%), Gaps = 10/547 (2%)
Strand=Plus/Minus
Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669
||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| ||
Sbjct 105358 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 105299
Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729
| ||| || | || | || || ||| || ||| |||||||| |||||
Sbjct 105298 GGCGTGCGCATGGCCACCACGCTGAGGGACACGCCGGGGTCCAGCTTCTTGT---TGGCG 105242
Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786
|| ||||| | |||| |||||| |||||||| ||| || ||||| | ||
Sbjct 105241 CTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGC 105182
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
|| || ||||| || |||||||| || ||| |||| ||||| || |||||||| ||
Sbjct 105181 CGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 105122
Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906
|||||||| | || ||| | ||| ||||| |||||||| || | || || ||
Sbjct 105121 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 105062
Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965
| || || ||||| || || || | | || | |||| | ||| ||| |||||
Sbjct 105061 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGAC 105003
Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025
|||||| || || |||||||| || | ||||| || || ||| | ||||
Sbjct 105002 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAGAG 104943
Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085
|| || || | | || || || ||||| ||||| || | || | | |||| ||
Sbjct 104942 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CA 104884
Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144
| || |||||| ||| || || |||||||| || ||| || || ||||||||||
Sbjct 104883 GCGAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCG 104824
Query 11145 TCCCAGG 11151
| || ||
Sbjct 104823 TTCCCGG 104817
>seq55079
Length=1765451
Score = 111 bits (122), Expect = 2e-19
Identities = 236/351 (67%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 8580 GAGGAGACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 8639
|||| || |||||| | || || ||| ||| | || | | ||||| || || || |||
Sbjct 1458255 GAGGCCACGCCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1458196
Query 8640 CTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAAC 8699
| || ||||| || | || || ||||| || ||| ||| | |||||||||
Sbjct 1458195 TACACCGTCAACTACCGCGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1458136
Query 8700 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 8759
|||||||| ||||| || ||| | | ||||| || ||||||||| | |||
Sbjct 1458135 CACGAGTCCCCCCGGCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCATCGGC 1458076
Query 8760 CAAATCGTCGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 8816
| ||| | ||| ||| || || | | || |||||| ||||| |||
Sbjct 1458075 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 1458019
Query 8817 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAG 8876
|||||||| |||| |||||| || || |||||||||||| | || || || || ||
Sbjct 1458018 GACTGGGGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 1457959
Query 8877 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927
| ||||| ||||||||||| || | |||| ||| |||| |||||||
Sbjct 1457958 CCTGACGACTATGTCGTCGCCACCGAGGAGTGCCACACCGTGGAGGAGTTC 1457908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596841832237040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |