Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17655 145 9e-30 seq58470 125 9e-24 seq55079 111 2e-19 >seq17655 Length=1090806 Score = 145 bits (160), Expect = 9e-30 Identities = 311/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 172840 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 172781 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | || ||| || |||| | |||| || Sbjct 172780 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 172723 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | ||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 172722 CGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 172663 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || |||||||| ||| |||| || |||| || |||||||| || ||||| || Sbjct 172662 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCG 172603 Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | | | | |||| | | ||||| | ||| | || ||| || ||| || Sbjct 172602 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 172547 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 172546 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 172487 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| || |||||||| | |||||| || || || || || || ||||||||||| ||||| Sbjct 172486 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 172427 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 172426 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393 >seq58470 Length=785708 Score = 125 bits (138), Expect = 9e-24 Identities = 361/547 (66%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 105358 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 105299 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | || || ||| || ||| |||||||| ||||| Sbjct 105298 GGCGTGCGCATGGCCACCACGCTGAGGGACACGCCGGGGTCCAGCTTCTTGT---TGGCG 105242 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| |||||| |||||||| ||| || ||||| | || Sbjct 105241 CTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGC 105182 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || ||| |||| ||||| || |||||||| || Sbjct 105181 CGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 105122 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | || ||| | ||| ||||| |||||||| || | || || || Sbjct 105121 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 105062 Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || ||||| || || || | | || | |||| | ||| ||| ||||| Sbjct 105061 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGAC 105003 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| || || |||||||| || | ||||| || || ||| | |||| Sbjct 105002 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAGAG 104943 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || ||||| ||||| || | || | | |||| || Sbjct 104942 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CA 104884 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| || || |||||||| || ||| || || |||||||||| Sbjct 104883 GCGAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCG 104824 Query 11145 TCCCAGG 11151 | || || Sbjct 104823 TTCCCGG 104817 >seq55079 Length=1765451 Score = 111 bits (122), Expect = 2e-19 Identities = 236/351 (67%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 8580 GAGGAGACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 8639 |||| || |||||| | || || ||| ||| | || | | ||||| || || || ||| Sbjct 1458255 GAGGCCACGCCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1458196 Query 8640 CTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAAC 8699 | || ||||| || | || || ||||| || ||| ||| | ||||||||| Sbjct 1458195 TACACCGTCAACTACCGCGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1458136 Query 8700 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 8759 |||||||| ||||| || ||| | | ||||| || ||||||||| | ||| Sbjct 1458135 CACGAGTCCCCCCGGCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCATCGGC 1458076 Query 8760 CAAATCGTCGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 8816 | ||| | ||| ||| || || | | || |||||| ||||| ||| Sbjct 1458075 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 1458019 Query 8817 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAG 8876 |||||||| |||| |||||| || || |||||||||||| | || || || || || Sbjct 1458018 GACTGGGGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 1457959 Query 8877 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 | ||||| ||||||||||| || | |||| ||| |||| ||||||| Sbjct 1457958 CCTGACGACTATGTCGTCGCCACCGAGGAGTGCCACACCGTGGAGGAGTTC 1457908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596841832237040