Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq16495 96.9 2e-15
seq54907 89.7 4e-13
>seq16495
Length=532983
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| || || ||||| || ||||| || |||||||||||
Sbjct 85663 TGCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAG 85604
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGT-CGTTT 15066
|| | | | | || || | ||||||||| || | ||||| ||||| |||| ||
Sbjct 85603 CAAGTGTGCGCCCATCCTCAAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGG 85544
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
|| || || |||||||| | || || ||| ||| | || || || ||| | ||
Sbjct 85543 GGGATGCCCTCCTTGTCCTAGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCA 85484
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || | ||| ||||| || || || || ||||| ||||| ||||||||
Sbjct 85483 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434
>seq54907
Length=1337563
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/227 (69%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | ||| | || |||||||| || ||||| |||||||||||| |
Sbjct 282170 CCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCG--G 282227
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| || | || |||| || |||||||| |||| | | ||||||||| |
Sbjct 282228 CCAATGTCCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGAG 282287
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| || |||||||| ||| ||| ||| ||| | || || ||||| | | || |
Sbjct 282288 GAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCGA 282347
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15174
| || | || || || || ||||| || || || ||||| || |||
Sbjct 282348 CCTCAAGAGTGATAGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGC 282394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357093468005330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |