Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq16495 96.9 2e-15 seq54907 89.7 4e-13 >seq16495 Length=532983 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| || || ||||| || ||||| || ||||||||||| Sbjct 85663 TGCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAG 85604 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGT-CGTTT 15066 || | | | | || || | ||||||||| || | ||||| ||||| |||| || Sbjct 85603 CAAGTGTGCGCCCATCCTCAAGTTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCCGGGG 85544 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || || || |||||||| | || || ||| ||| | || || || ||| | || Sbjct 85543 GGGATGCCCTCCTTGTCCTAGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCA 85484 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 85483 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 85434 >seq54907 Length=1337563 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| | || |||||||| || ||||| |||||||||||| | Sbjct 282170 CCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCG--G 282227 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| || | || |||| || |||||||| |||| | | ||||||||| | Sbjct 282228 CCAATGTCCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGAG 282287 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| ||| ||| ||| ||| | || || ||||| | | || | Sbjct 282288 GAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCGA 282347 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15174 | || | || || || || ||||| || || || ||||| || ||| Sbjct 282348 CCTCAAGAGTGATAGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGC 282394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357093468005330