Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 145 9e-30
seq58470 136 5e-27
seq55079 120 4e-22
seq16381 93.3 5e-14
>seq17655
Length=1090806
Score = 145 bits (160), Expect = 9e-30
Identities = 311/454 (69%), Gaps = 12/454 (3%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| || ||||| ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 172840 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 172781
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
| || || ||||| | | ||| | | || ||| || |||| | |||| ||
Sbjct 172780 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 172723
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | ||| |||| ||||||| ||| || |||||| |||| |||
Sbjct 172722 CGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 172663
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || |||||||| ||| |||| || |||| |||||||| || || ||||| ||
Sbjct 172662 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCG 172603
Query 127469 T-GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524
|| | | | |||| | | ||| | | ||| | || ||| || || ||
Sbjct 172602 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CAG-GCGAA 172547
Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584
|| ||| || |||||||| ||||||||||| || || |||||| || || |||||
Sbjct 172546 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 172487
Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644
||| || |||||||| | |||||| || || || || ||||| ||||||||||| |||||
Sbjct 172486 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 172427
Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678
|| || ||||| || | | |||||||| |||
Sbjct 172426 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393
>seq58470
Length=785708
Score = 136 bits (150), Expect = 5e-27
Identities = 366/552 (66%), Gaps = 6/552 (1%)
Strand=Plus/Minus
Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577
|||| |||| | ||| ||||||| ||| || | |||||| || | |||||| ||
Sbjct 105365 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCT 105306
Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637
||| || | ||| || | || | || || ||| || ||| ||||||||
Sbjct 105305 GAACCCGGGCGTGCGCATGGCCACCACGCTGAGGGACACGCCGGGGTCCAGCTTCTTGT- 105247
Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696
| | || ||| || | | |||| |||||| |||||||| ||| || ||||| |
Sbjct 105246 TGGCGCTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACA 105187
Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756
|| || || ||||| || |||||||| || ||| |||| ||||| || |||||||
Sbjct 105186 CCTGCCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCG 105127
Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816
| || |||||||| | || ||| | ||| |||||| |||||||| || | || |
Sbjct 105126 TGGCGGCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCT 105067
Query 12817 GATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTA 12875
| || | || || || || || || || | | || | |||| | ||| |||
Sbjct 105066 GGTTCAGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGG 105008
Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935
||||||||||| || ||||| ||||| || | ||||| || || ||| |
Sbjct 105007 CCGACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTG 104948
Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995
|||| || ||||| | | || || || ||||| |||||||| | || | | ||
Sbjct 104947 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCG 104888
Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054
|| || | || |||||| ||| || || |||||||| || ||| || || |||||
Sbjct 104887 GA-CAGCGAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTT 104829
Query 13055 CCCCGTCCCTGG 13066
|||||| || ||
Sbjct 104828 CCCCGTTCCCGG 104817
>seq55079
Length=1765451
Score = 120 bits (132), Expect = 4e-22
Identities = 238/351 (68%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 10495 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 10554
|||| ||||||||| | || || ||| ||| | || | | ||||| || || || |||
Sbjct 1458255 GAGGCCACGCCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1458196
Query 10555 CTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAAC 10614
| || || ||||| | || || ||||| | ||| ||| | |||||||||
Sbjct 1458195 TACACCGTCAACTACCGCGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1458136
Query 10615 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 10674
|||||||| ||||| || ||| | | ||||| || ||||||||| | |||
Sbjct 1458135 CACGAGTCCCCCCGGCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCATCGGC 1458076
Query 10675 CAAATCGTGGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 10731
| ||| || ||| ||| || || | | || |||||| ||||| |||
Sbjct 1458075 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 1458019
Query 10732 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAG 10791
|||||||| |||| |||||| || || |||||||||||| | ||||| || || ||
Sbjct 1458018 GACTGGGGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 1457959
Query 10792 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842
| ||||| ||||||||||| || | |||| ||| |||| |||||||
Sbjct 1457958 CCTGACGACTATGTCGTCGCCACCGAGGAGTGCCACACCGTGGAGGAGTTC 1457908
>seq16381
Length=215813
Score = 93.3 bits (102), Expect = 5e-14
Identities = 278/421 (66%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749
||||||| || ||||| || || ||||| || || || || ||| || | |||
Sbjct 82214 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 82273
Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCGAAGCCATCCATCTCAG 12807
| ||| ||||| |||| || | || || || || | |||||| |||||||| |
Sbjct 82274 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGA--GAAGCCGTCCATCTCCG 82331
Query 12808 TCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACT 12865
| | || || || ||||| || || | || || ||| | || ||| || ||||
Sbjct 82332 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACC 82389
Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925
|| ||| | |||||||||||||| || || ||||| ||||| || || || |
Sbjct 82390 ACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTT 82449
Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985
||| || |||| || | ||| || || || ||||| || || | ||| || ||
Sbjct 82450 GGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAA 82509
Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045
| | |||| || || |||||| || || || || |||| ||| ||||||||
Sbjct 82510 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAG 82569
Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 13104
|| |||||||| ||||| || || |||| | |||| | | | |||||| |||| |
Sbjct 82570 CAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCC 82628
Query 13105 C 13105
|
Sbjct 82629 C 82629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612981593044080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |