Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17655 145 9e-30 seq58470 136 5e-27 seq55079 120 4e-22 seq16381 93.3 5e-14 >seq17655 Length=1090806 Score = 145 bits (160), Expect = 9e-30 Identities = 311/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 172840 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 172781 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| | | ||| | | || ||| || |||| | |||| || Sbjct 172780 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 172723 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 172722 CGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 172663 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||||||| ||| |||| || |||| |||||||| || || ||||| || Sbjct 172662 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCG 172603 Query 127469 T-GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524 || | | | |||| | | ||| | | ||| | || ||| || || || Sbjct 172602 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CAG-GCGAA 172547 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 172546 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 172487 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 172486 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTC 172427 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | | |||||||| ||| Sbjct 172426 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 172393 >seq58470 Length=785708 Score = 136 bits (150), Expect = 5e-27 Identities = 366/552 (66%), Gaps = 6/552 (1%) Strand=Plus/Minus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| ||||||| ||| || | |||||| || | |||||| || Sbjct 105365 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCT 105306 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | ||| || | || | || || ||| || ||| |||||||| Sbjct 105305 GAACCCGGGCGTGCGCATGGCCACCACGCTGAGGGACACGCCGGGGTCCAGCTTCTTGT- 105247 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| |||||| |||||||| ||| || ||||| | Sbjct 105246 TGGCGCTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACA 105187 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| |||| ||||| || ||||||| Sbjct 105186 CCTGCCGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCG 105127 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || |||||||| | || ||| | ||| |||||| |||||||| || | || | Sbjct 105126 TGGCGGCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCT 105067 Query 12817 GATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTA 12875 | || | || || || || || || || | | || | |||| | ||| ||| Sbjct 105066 GGTTCAGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGG 105008 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| || ||||| ||||| || | ||||| || || ||| | Sbjct 105007 CCGACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTG 104948 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 |||| || ||||| | | || || || ||||| |||||||| | || | | || Sbjct 104947 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCG 104888 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 || || | || |||||| ||| || || |||||||| || ||| || || ||||| Sbjct 104887 GA-CAGCGAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTT 104829 Query 13055 CCCCGTCCCTGG 13066 |||||| || || Sbjct 104828 CCCCGTTCCCGG 104817 >seq55079 Length=1765451 Score = 120 bits (132), Expect = 4e-22 Identities = 238/351 (68%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 10495 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 10554 |||| ||||||||| | || || ||| ||| | || | | ||||| || || || ||| Sbjct 1458255 GAGGCCACGCCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCGCACTGG 1458196 Query 10555 CTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAAC 10614 | || || ||||| | || || ||||| | ||| ||| | ||||||||| Sbjct 1458195 TACACCGTCAACTACCGCGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 1458136 Query 10615 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 10674 |||||||| ||||| || ||| | | ||||| || ||||||||| | ||| Sbjct 1458135 CACGAGTCCCCCCGGCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCATCGGC 1458076 Query 10675 CAAATCGTGGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 10731 | ||| || ||| ||| || || | | || |||||| ||||| ||| Sbjct 1458075 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 1458019 Query 10732 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAG 10791 |||||||| |||| |||||| || || |||||||||||| | ||||| || || || Sbjct 1458018 GACTGGGGCTTCGCCGGGGACTACGTGGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 1457959 Query 10792 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 | ||||| ||||||||||| || | |||| ||| |||| ||||||| Sbjct 1457958 CCTGACGACTATGTCGTCGCCACCGAGGAGTGCCACACCGTGGAGGAGTTC 1457908 >seq16381 Length=215813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 278/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || || ||||| || || || || ||| || | ||| Sbjct 82214 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 82273 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCGAAGCCATCCATCTCAG 12807 | ||| ||||| |||| || | || || || || | |||||| |||||||| | Sbjct 82274 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGA--GAAGCCGTCCATCTCCG 82331 Query 12808 TCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACT 12865 | | || || || ||||| || || | || || ||| | || ||| || |||| Sbjct 82332 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACC 82389 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 || ||| | |||||||||||||| || || ||||| ||||| || || || | Sbjct 82390 ACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTT 82449 Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || |||| || | ||| || || || ||||| || || | ||| || || Sbjct 82450 GGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAA 82509 Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | |||| || || |||||| || || || || |||| ||| |||||||| Sbjct 82510 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAG 82569 Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 13104 || |||||||| ||||| || || |||| | |||| | | | |||||| |||| | Sbjct 82570 CAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCC 82628 Query 13105 C 13105 | Sbjct 82629 C 82629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612981593044080