Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 188 1e-42
>seq17655
Length=1090806
Score = 188 bits (208), Expect = 1e-42
Identities = 530/807 (66%), Gaps = 30/807 (4%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || || || ||||| | |||| |||||
Sbjct 172825 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 172766
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| || ||||| | || || ||| |||| | ||| ||||| || ||
Sbjct 172765 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCCACGAACTC 172706
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| | || | ||| || || | ||| ||| ||||| || |
Sbjct 172705 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGCAGCGCGTCGCA 172646
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885
| |||||| |||| || || || || |||| || |||| |||| || ||||
Sbjct 172645 GACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGGGACTCGT- 172587
Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942
|| ||||||| || |||| || | |||||||| || ||||||||||||||
Sbjct 172586 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 172535
Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002
|||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| |||
Sbjct 172534 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTT 172475
Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061
|||||||| || |||| |||| ||| | ||| || ||||| ||||| ||| || |
Sbjct 172474 CTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGA 172416
Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120
| || |||| | ||| | || ||| | | | | | |||| | ||||||
Sbjct 172415 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGGGCCCAG 172360
Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176
|| ||| ||||| ||||||| ||| |||| |||| || | | |||||
Sbjct 172359 TCGGCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 172304
Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236
||| | || ||| || | || ||| |||||||| || | ||| | ||
Sbjct 172303 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 172244
Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296
|||||||| ||||| ||| |||||| | ||||| |||||| || |
Sbjct 172243 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 172184
Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356
|||||| | || || | || | ||||||| ||| || ||||| || | |||
Sbjct 172183 GAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 172124
Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416
||| |||||||| || | |||||| ||| ||| | | |||||||| | ||||
Sbjct 172123 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCCAGTGGCGCGCGTCGGA 172064
Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443
|| | || ||||| || ||| ||||
Sbjct 172063 GGAGAGGTCCACCTCCTCGGCGGTCCA 172037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794473970661280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |