Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17655 188 1e-42 >seq17655 Length=1090806 Score = 188 bits (208), Expect = 1e-42 Identities = 530/807 (66%), Gaps = 30/807 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 172825 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 172766 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || ||||| | || || ||| |||| | ||| ||||| || || Sbjct 172765 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCCACGAACTC 172706 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||| ||||| || | Sbjct 172705 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGCAGCGCGTCGCA 172646 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| || |||| |||| || |||| Sbjct 172645 GACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGGGACTCGT- 172587 Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||||||| || |||| || | |||||||| || |||||||||||||| Sbjct 172586 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 172535 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| Sbjct 172534 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTT 172475 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| |||| ||| | ||| || ||||| ||||| ||| || | Sbjct 172474 CTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGA 172416 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 | || |||| | ||| | || ||| | | | | | |||| | |||||| Sbjct 172415 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGGGCCCAG 172360 Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || ||| ||||| ||||||| ||| |||| |||| || | | ||||| Sbjct 172359 TCGGCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 172304 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| | || ||| || | || ||| |||||||| || | ||| | || Sbjct 172303 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 172244 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 |||||||| ||||| ||| |||||| | ||||| |||||| || | Sbjct 172243 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 172184 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 172183 GAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 172124 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| |||||||| || | |||||| ||| ||| | | |||||||| | |||| Sbjct 172123 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCCAGTGGCGCGCGTCGGA 172064 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || ||||| || ||| |||| Sbjct 172063 GGAGAGGTCCACCTCCTCGGCGGTCCA 172037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794473970661280