Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq56172 93.3 2e-13 seq55416 84.2 9e-11 seq18401 84.2 9e-11 seq15106 84.2 9e-11 >seq56172 Length=445662 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || || || || ||||| || || Sbjct 373180 ATGCAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCA 373239 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || || ||||| || ||||| || || || Sbjct 373240 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 373299 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || ||||| ||||| | ||||||||||| || || Sbjct 373300 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCGGACTACAAC 373359 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | ||||||||||| || Sbjct 373360 ATCCAGAAGGAGTCCACACTTCACTTGGT 373388 >seq55416 Length=396008 Score = 84.2 bits (92), Expect = 9e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || ||||| ||||| ||||| || |||| | || | | || Sbjct 106781 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCGGTCTCCAAGGCT 106840 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| || || ||||||||||||||||| || || || || || || ||||| || Sbjct 106841 GTTATTACAGTCCCAGCTTATTTCAATGATGCCCAGCGTCAGGCCACCAAGGATGCTGGT 106900 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| || | || | | ||||| ||||| || || || || ||||| | Sbjct 106901 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTGTCG 106960 Query 451445 TATGGA 451450 |||||| Sbjct 106961 TATGGA 106966 >seq18401 Length=486158 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| ||||| ||||| ||||||||||| || |||| || || || ||||| Sbjct 477663 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 477604 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | ||||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 477603 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 477545 >seq15106 Length=2046797 Score = 84.2 bits (92), Expect = 9e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 824327 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 824386 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | | || || || ||||| || || |||||||| Sbjct 824387 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTG 824446 Query 451442 GCATATGGA 451450 | |||||| Sbjct 824447 TCTTATGGA 824455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973983436470104