Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq58782 122 7e-22 seq54868 113 3e-19 seq37111 113 3e-19 seq15240 113 3e-19 seq59851 111 1e-18 seq35556 87.8 1e-11 seq18401 86.0 5e-11 >seq58782 Length=1261902 Score = 122 bits (134), Expect = 7e-22 Identities = 556/863 (64%), Gaps = 38/863 (4%) Strand=Plus/Minus Query 517466 GGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAA 517521 || || |||||||| || ||||| | | ||||| | ||| || || || || | Sbjct 1005700 GGGATGGTTGTGTTCCTTGGGATCAAGACT----GTCATTACACCTCCAGCCGTCTCCAG 1005645 Query 517522 ACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG 517581 |||||||||||||||||||||||| | ||| | | | || | || || | | Sbjct 1005644 ACCAAGAGAAAGAGGAGTGACATCCAATAGCAGCAGGTCCTGGACCTTCTCGTTGCCCTC 1005585 Query 517582 ACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA 517640 ||| ||||| | || || || | ||||| || || |||||||| |||||||| || | Sbjct 1005584 ACCGCTCAAGA-TGGCAGCCTGGACGGCAGCTCCGTAGGCAACAGCCTCATCAGGGTTGA 1005526 Query 517641 --CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 517698 | || || || | || |||||||| || | |||||| || || | || Sbjct 1005525 TGCTCTTGCAG--AGCTCCTTGCCATTGAAGAAGTCCTGAAGAAGCTGCTGCACTCTGGG 1005468 Query 517699 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTG 517757 ||| | || || || ||||| | |||| || ||||| ||| | || |||| |||| Sbjct 1005467 AATCCTAGTGGAACCACCAACAAGGACAACATCGTGCACG-GTGCTCTTGTCCATCTTTG 1005409 Query 517758 AATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC--TGAACAAAG 517815 ||| ||| || || || || || | || | || |||| || || || Sbjct 1005408 CGTCCCTCAAACACTTCTCCACAGGCTCCATACACTTCCTGAACAGATCCATGTTCATC- 1005350 Query 517816 TTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAAT 517874 || || || | || | || | ||| | || || ||||| || || |||| || | Sbjct 1005349 -TCCTCAAACCTGGCACGGGTGATGGTGG-AGTAGAAGTCAATGCCCTCAAACAGCGAGT 1005292 Query 517875 CAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 517931 ||| ||||| || || || ||| || || || ||| | | || || | ||||| | Sbjct 1005291 CAATCTCAATGGTGGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT--GCCCTCTCACAGG 1005235 Query 517932 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCT 517989 |||||| || || || | ||| ||| | ||| | | | || | || | || || Sbjct 1005234 ATGTCCTCAGCCTCCGCAGAGCTCTTG--GGTTGCCACTGATGTCCTTCTTGTTCTTCCT 1005177 Query 517990 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 518049 |||||| || | |||| | | || | | || ||||| || ||||| || | | Sbjct 1005176 CTTGAACTCCTGAACAAAGTGGTTGACCATCCTGTTGTCAAAGTCCTCACCACCAAGATG 1005117 Query 518050 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTAC 518109 ||| | || | || ||| | || | ||| | || || |||| | | ||||| || Sbjct 1005116 AGTGTCACCAGCTGTGGCTTTAACCTCGAAGATACCCTCCTCAATGGTGAGAAGAGAGAC 1005057 Query 518110 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG---- 518164 ||| ||| ||||| || | ||||| || || || ||| | || | ||| Sbjct 1005056 ATCGAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTTCTTCTCACCAACACTGGAAGC 1004997 Query 518165 -TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || || ||||||||||| |||| |||||||| ||||| ||||| || || | | || Sbjct 1004996 CTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTTGGCTCATTGATGATACGGAGGAC 1004937 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 ||| | |||||||| || ||||| || || || || || || || || || || || Sbjct 1004936 ATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCCTGCCTCTGCGAGTCATTGAAGTA 1004877 Query 518284 TGCAGGAACAGTAATAACGGCAT 518306 |||||| ||||| | ||| |||| Sbjct 1004876 TGCAGGTACAGTGACAACAGCAT 1004854 >seq54868 Length=1506235 Score = 113 bits (124), Expect = 3e-19 Identities = 549/858 (64%), Gaps = 28/858 (3%) Strand=Plus/Plus Query 517466 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCA 517525 || || || ||||| || ||| | | |||||| | ||| || || || || | |||| Sbjct 505167 GGGATGGTGGTGTTCCTTGGAATCAAAACGGTCATGACACCTCCAGCAGTCTCCAGACCA 505226 Query 517526 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 517585 ||||||||||| |||||||||| || | | | || | || || | | | ||| Sbjct 505227 AGAGAAAGAGGTGTGACATCAAGCAGCAGGAGGTCCTGGACCTTCTCGTTACCCTCTCCA 505286 Query 517586 A-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 517644 ||||| | || || || | ||||||||||| |||||||| |||||||| || | | Sbjct 505287 CTCAAGA-TGGCAGCCTGGACTGCAGCACCATAGGCAACAGCCTCATCAGGGTTGATGTT 505345 Query 517645 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACG 517704 | || | || |||||||| || | ||| || || ||| | || || | Sbjct 505346 CTTGCACAGCTCCTTGCCATTGAAGAAGTCCTGAAGCAGCTGCTGCACCCTTGGGATCCT 505405 Query 517705 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCA 517763 | || || ||||| | |||| ||||| || ||| | || |||| || | |||| Sbjct 505406 GGTGGAGCCACCAACAAGGACAACATCATGGACA-GTGCTCTTGTCCATCTTAGCATCCC 505464 Query 517764 ATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC--TGAACAAAGTTCTTC 517821 | || ||||| || || | | | || || | ||| || ||| || || Sbjct 505465 TCAGGCACTTCTCAACAGGCTCCATGCACTTCCTGAAGAGGTCCATGTTCAAC--TCCTC 505522 Query 517822 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 517879 || | || | || | || | | || || || || || || ||| || |||| Sbjct 505523 AAACCTGGCACGGGTGATGGT--CGTGTAGAAGTCGATGCCCTCATACAGCGAGTCAATC 505580 Query 517880 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 517939 ||||| || ||||| | | || || || | | || || || ||||| |||||||| Sbjct 505581 TCAATGGTGGTTTGTGCAGTGGAGGAGAGGGTCCTCTTCGCCCGCTCACAAGCTGTCCTC 505640 Query 517940 AGTCTTCGTA-AGGCTT----TTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGA 517994 || || || | || | | |||| | | ||| || | || | || ||||||| Sbjct 505641 AGCCTACGGAGAGCCCTGGGGTTGCCGCT-GATG----TCCTTCTTGTTCTTCCTCTTGA 505695 Query 517995 AATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTAT 518054 | || | ||| | | || | | |||||||| || ||||| || | | ||| | Sbjct 505696 ATTCCTGGACAAAGTGGTTGACCATCCTGTTATCAAAGTCCTCACCACCAAGGTGAGTGT 505755 Query 518055 TTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCAT 518114 || | || | | || | || | || ||||||| | | ||||| |||||| Sbjct 505756 CACCAGCAGTGGACTTGACCTCAAAGATGCCCTCTTCAATGGTGAGAAGAGAGACATCAA 505815 Query 518115 GGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT----TGG--TTTT 518168 ||| || ||||| | ||||| || || |||||| | || | ||| || | Sbjct 505816 AGGTGCCGCCACCAAGGTCAAAGATGAGAACATTCTTCTCACCAACACTGGTGGCCTTCT 505875 Query 518169 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 518228 | ||||||||||| |||| ||||||||| ||||| || || || || | || |||||| | Sbjct 505876 TGTCAAGACCATAAGCAATAGCAGCAGCGGTTGGCTCGTTGATGATGCGCATAACATTTA 505935 Query 518229 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 518288 | || ||||| ||| ||||| || ||||| || || || || || || || || |||| Sbjct 505936 GGCCTGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTGAAGTAGGCAG 505995 Query 518289 GAACAGTAATAACGGCAT 518306 | ||||| | || |||| Sbjct 505996 GGACAGTGACCACAGCAT 506013 >seq37111 Length=151593 Score = 113 bits (124), Expect = 3e-19 Identities = 303/462 (66%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||||| ||| || || | ||||| | ||||| || ||||| | | ||||| || | Sbjct 24112 AATCAACTCCCTCAAAGAGTGAATCGATCTCAATGGTGGTTTGGGCAGTGGAAGAAAGGG 24171 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 517970 | || || | ||||| | ||||| || |||| || | | | | | | | Sbjct 24172 TCCTCTTCGCCCTCTCACAAGAAGTCCTGAGCCTTCTCAAAGACCTGGGGTTTCCACTGA 24231 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | || | || |||||||| |||| ||| | | || | ||| || |||| Sbjct 24232 TATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAA 24291 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | ||| | || | ||| || | || | |||| || || | Sbjct 24292 AGTCCTCCCCACCAAGATGAGTGTCACCAGCCGTGGCCTTCACCTCAAAAATACCCTCCT 24351 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | |||||| || |||||||| | ||||| ||||| |||||| Sbjct 24352 CAATGGTAAGGAGGGAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCT 24411 Query 518151 TTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | | |||| | || ||||||||||| |||| ||||| || ||||| | Sbjct 24412 TCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCTGTTGGCT 24471 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | || || || | || ||||||||||||||||| || ||||| || || || || | Sbjct 24472 CGTTGATGATACGCATCACATTAAGACCAGCAATAACACCGGCATCCTTGGTTGCCTGCC 24531 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || ||||| || || || ||||| || || | ||| |||| Sbjct 24532 TCTGGGAATCATTGAAGTAAGCAGGCACGGTGACAACAGCAT 24573 >seq15240 Length=986841 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| |||| ||||||||||||||| || || || || | || |||| Sbjct 684795 TTCTTGTCAAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGCATAACA 684854 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||| | | ||| || || || ||||| ||||| || || ||||| || || Sbjct 684855 TTCAGACCAGCCAAACCTCCAGCTTCCTTGGTGGCCTGTCTCTGAGAGTCGTTGAAGTAG 684914 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||| | | ||| |||| Sbjct 684915 GCAGGGACACTGACAACAGCAT 684936 >seq59851 Length=371957 Score = 111 bits (122), Expect = 1e-18 Identities = 533/829 (64%), Gaps = 30/829 (4%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| || ||||| || | |||||||||||||||||||||||| | ||| | Sbjct 244670 GTCATCACACCCCCGGCTGTCTCCAGACCAAGAGAAAGAGGAGTGACATCCAATAGCAGC 244611 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || || | | || ||||| | || || || | |||||| || Sbjct 244610 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 244552 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 244551 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 244494 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | ||||| || || || ||||| | || || || ||||| | |||| || Sbjct 244493 TCCTGGAGAAGCTGCTGCACTTTTGGAATCCTAGTGGAACCACCAACAAGGACAACATCG 244434 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 244433 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCCACAGGCTCCATACA 244375 Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | || |||| || || || || || || |||| | || | ||| | || Sbjct 244374 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTAGCCCGGGTGATGGTGG-AGTA 244318 Query 517850 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGA 517905 || ||||| ||||| |||| || |||| ||||| || || || ||| || || || Sbjct 244317 GAAGTCAATGCCTTCAAACAGCGAGTCAATCTCAATGGTGGTCTGCGCAGTGGAGGA-GA 244259 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 ||| | | || || | ||||| | |||||| || || || | ||| | | | ||| Sbjct 244258 GAGTCCTCTTT--GCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTCG--GGTTG 244203 Query 517966 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 | | | || | || | || |||||||| || | || | | || | | Sbjct 244202 CCACTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGGACGAAGTGGTTGACCATCCTG 244143 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || || || || ||||| || | | ||| | || | || ||| | || | || | Sbjct 244142 TTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGATA 244083 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 || || |||| | | ||||| |||||| ||| |||||||| | ||||| || || Sbjct 244082 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCGAGGTCAAAGATGAGG 244023 Query 518144 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 244022 ACGTTCTTCTCACCAACACTGGATGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 243963 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| || || || || | | ||||| | |||||||| || ||||| || || Sbjct 243962 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTA 243903 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || || |||||||| ||||| | ||| |||| Sbjct 243902 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 243854 >seq35556 Length=170707 Score = 87.8 bits (96), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| || || ||||||| ||||| | || | || |||| |||| || | Sbjct 70271 ACATCAAAAGTACCGCCACCCAAGTCAAACACTAGAA---TCGTTTCGTTGTTTT---TC 70218 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| | Sbjct 70217 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 70158 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || ||||| | || ||||| || || ||| ||| || || || || || || || Sbjct 70157 AGCCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGCGAGTCATTGAAGTACGCT 70098 Query 518288 GGAACAGTAA 518297 ||||| |||| Sbjct 70097 GGAACGGTAA 70088 >seq18401 Length=486158 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 518188 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 518247 ||||||||||||||||||||| || || || |||| ||| |||||||| | || || Sbjct 477547 AGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCAATACGGCCAGC 477606 Query 518248 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| || ||||| || || || | ||| || || || || ||||| ||||| || || Sbjct 477607 ATCCTTGGTGGCCTGCCTCTGAGCATCATTGAAGTAAGCTGGAACGGTAATGACAGC 477663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777421318675828