Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq17655 141 1e-28 seq59844 105 8e-18 seq16381 96.9 4e-15 >seq17655 Length=1090806 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 172393 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 172452 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 172453 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 172512 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 172513 GCTCATCTCCCGCGACGAGGGCCTGCAC 172540 >seq59844 Length=164292 Score = 105 bits (116), Expect = 8e-18 Identities = 202/291 (69%), Gaps = 20/291 (7%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | ||| ||| | || ||| | | || || || || Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | |||| || || |||||| | |||||||||||||||| |||| ||||| || | Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 23227 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 16059 ||| || |||| |||||| ||| | |||||| | ||| | |||| | | Sbjct 23226 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 23173 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 16117 | || |||||||| ||||||| || || ||||| || ||| || | | | |||| Sbjct 23172 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 23115 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 |||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 23114 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064 >seq16381 Length=215813 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || || ||||| || || ||||| || || | ||| | || || ||| Sbjct 82226 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 82285 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| || | | ||| |||||| | || || |||||||| || | ||||||| Sbjct 82286 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 82343 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| || || ||| | || ||| || |||| || ||| | || Sbjct 82344 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 82401 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 82402 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 82457 Query 16117 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | ||||| |||| ||| || | ||||||||||| || || | ||| || || | | Sbjct 82458 CGAAGAGGTCCC--TCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGA 82515 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 82516 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 82575 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 82576 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 82629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620210594467360