Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 141 1e-28
seq59844 105 8e-18
seq16381 96.9 4e-15
>seq17655
Length=1090806
Score = 141 bits (156), Expect = 1e-28
Identities = 120/148 (81%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
||| || ||||| || |||| || || || || ||||| ||||||||||| || |||||
Sbjct 172393 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 172452
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 172453 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 172512
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320
||| ||||| || |||||||| || |||
Sbjct 172513 GCTCATCTCCCGCGACGAGGGCCTGCAC 172540
>seq59844
Length=164292
Score = 105 bits (116), Expect = 8e-18
Identities = 202/291 (69%), Gaps = 20/291 (7%)
Strand=Plus/Minus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
|||||||| || || | ||| | ||| ||| | || ||| | | || || || ||
Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285
Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005
| |||| || || |||||| | |||||||||||||||| |||| ||||| || |
Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 23227
Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 16059
||| || |||| |||||| ||| | |||||| | ||| | |||| | |
Sbjct 23226 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 23173
Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 16117
| || |||||||| ||||||| || || ||||| || ||| || | | | ||||
Sbjct 23172 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 23115
Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168
|||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 23114 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064
>seq16381
Length=215813
Score = 96.9 bits (106), Expect = 4e-15
Identities = 277/415 (67%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
||||| || || ||||| || || ||||| || || | ||| | || || |||
Sbjct 82226 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 82285
Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002
|||| || | | ||| |||||| | || || |||||||| || | |||||||
Sbjct 82286 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 82343
Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060
|||| || || |||| || || ||| | || ||| || |||| || ||| | ||
Sbjct 82344 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 82401
Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116
||||| ||||||||||| |||||||||||||| || ||| || || | |
Sbjct 82402 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 82457
Query 16117 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
| ||||| |||| ||| || | ||||||||||| || || | ||| || || | |
Sbjct 82458 CGAAGAGGTCCC--TCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGA 82515
Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234
|||| || || |||||| || | || || || | ||| |||||||| || ||
Sbjct 82516 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 82575
Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288
||| || || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 82576 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 82629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620210594467360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |