Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq16381 127 2e-24
seq58470 123 3e-23
seq66718 100 3e-16
seq17655 96.9 4e-15
seq35231 84.2 3e-11
seq66364 82.4 9e-11
>seq16381
Length=215813
Score = 127 bits (140), Expect = 2e-24
Identities = 259/384 (67%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||| |||||||| || ||||| |||||||| || ||||| || | ||| |||||
Sbjct 82315 GAAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTT------ 82368
Query 11652 CATACCACC--TGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705
| ||||| | ||| ||||| | | ||||| |||||||||||||||||||| ||
Sbjct 82369 CCCCCCACCCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGAC 82428
Query 11706 GATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAAC 11765
||| || || ||||| |||| ||||| || || | || | ||| || ||
Sbjct 82429 GATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCAC 82488
Query 11766 ACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825
||| ||||| | ||| ||||| | | || | || | |||||| || | |||
Sbjct 82489 ACCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTC 82548
Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885
|| |||| ||| || ||||| || ||||| || || || || | || |||| |||
Sbjct 82549 CCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCA 82608
Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945
||| |||||||||||| || | ||| || || |||||||||||||| ||
Sbjct 82609 GCCCTTGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAGTCGAC 82668
Query 11946 AATCTCCTCAAGTTCCTCCTTGGC 11969
| ||||| || || ||||||
Sbjct 82669 GACCTCCTGCAGCTCGAGCTTGGC 82692
>seq58470
Length=785708
Score = 123 bits (136), Expect = 3e-23
Identities = 318/474 (67%), Gaps = 14/474 (3%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| ||||| || || |||||||| || || | || || || || ||||| || |||
Sbjct 105181 CGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 105122
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| ||||| | | ||| | || | ||| |||||||| || ||||| ||||||||
Sbjct 105121 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 105062
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679
| |||||| || ||||| |||||| || || || | ||||| |||| | |||
Sbjct 105061 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCG 105005
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
|| ||||| ||||| |||||||| || | ||||| |||| | |||| | |||
Sbjct 105004 ACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAG 104945
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799
|| || || || ||| ||| || || || ||||||||||| | ||| | | | | |
Sbjct 104944 AGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCCGGA 104886
Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858
|| || | |||||| || | ||| || ||||| || || || || ||||| ||
Sbjct 104885 CAGCGAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCC 104826
Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT-CTTGGCACCACTTCC--AAA 11915
||| || || | || | || || | || |||||| |||| | |||| || ||
Sbjct 104825 CGTTCCCGGCGGGCCGACCAGGAGCACCCCCTTGGGGATCCTTGCCCCCACCGCCGTGAA 104766
Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
| | ||||| ||||||||| | ||| ||||||| | |||| ||| ||
Sbjct 104765 CTTG---TCAGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGC 104715
>seq66718
Length=721455
Score = 100 bits (110), Expect = 3e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||||| ||||||||||| || |||||||||||||| || || || ||||||
Sbjct 178383 GTAGATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGACTAGTGGA 178442
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846
||| |||||||| ||||||| |||||| |||||
Sbjct 178443 AGCAGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 178477
>seq17655
Length=1090806
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || || |||||||| ||
Sbjct 172539 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 172480
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| |||||||| || || || || |||||||||||||| || |||
Sbjct 172479 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAG 172420
Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686
||||| |||| | ||||| || || | || | ||||| ||| ||| |||||
Sbjct 172419 GCGAAGGCGACGATGCGCTCGGCGAAGCGCTCCCCGC-CGTCGATCCAGCGGAGGGCCCA 172361
Query 119687 GTTGGCCTTACG 119698
|| |||||| ||
Sbjct 172360 GTCGGCCTTGCG 172349
>seq35231
Length=668061
Score = 84.2 bits (92), Expect = 3e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772
||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||
Sbjct 648680 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCCCAGGTTCGAGACC 648735
>seq66364
Length=958838
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||| | ||||| | | |||||| |||||||||||||||
Sbjct 492698 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 492639
Query 136777 GGGAACAGCTTTTAGATATATTTTTTGTATGTA 136809
|||| || ||||| | ||| ||| ||||||
Sbjct 492638 GGGAGCACCTTTTTGTTATTATTTCATTATGTA 492606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588471409536400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |