Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16381 127 2e-24 seq58470 123 3e-23 seq66718 100 3e-16 seq17655 96.9 4e-15 seq35231 84.2 3e-11 seq66364 82.4 9e-11 >seq16381 Length=215813 Score = 127 bits (140), Expect = 2e-24 Identities = 259/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || ||||| |||||||| || ||||| || | ||| ||||| Sbjct 82315 GAAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTT------ 82368 Query 11652 CATACCACC--TGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705 | ||||| | ||| ||||| | | ||||| |||||||||||||||||||| || Sbjct 82369 CCCCCCACCCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGAC 82428 Query 11706 GATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAAC 11765 ||| || || ||||| |||| ||||| || || | || | ||| || || Sbjct 82429 GATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCAC 82488 Query 11766 ACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825 ||| ||||| | ||| ||||| | | || | || | |||||| || | ||| Sbjct 82489 ACCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTC 82548 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || |||| ||| || ||||| || ||||| || || || || | || |||| ||| Sbjct 82549 CCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCA 82608 Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 ||| |||||||||||| || | ||| || || |||||||||||||| || Sbjct 82609 GCCCTTGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAGTCGAC 82668 Query 11946 AATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 82669 GACCTCCTGCAGCTCGAGCTTGGC 82692 >seq58470 Length=785708 Score = 123 bits (136), Expect = 3e-23 Identities = 318/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 105181 CGGTCGAAGCGTCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 105122 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||| | || | ||| |||||||| || ||||| |||||||| Sbjct 105121 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 105062 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| || || || | ||||| |||| | ||| Sbjct 105061 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCG 105005 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 105004 ACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAG 104945 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || ||| ||| || || || ||||||||||| | ||| | | | | | Sbjct 104944 AGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCCGGA 104886 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || | |||||| || | ||| || ||||| || || || || ||||| || Sbjct 104885 CAGCGAGAAGAAGGGCACGGCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCC 104826 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT-CTTGGCACCACTTCC--AAA 11915 ||| || || | || | || || | || |||||| |||| | |||| || || Sbjct 104825 CGTTCCCGGCGGGCCGACCAGGAGCACCCCCTTGGGGATCCTTGCCCCCACCGCCGTGAA 104766 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||||| ||||||||| | ||| ||||||| | |||| ||| || Sbjct 104765 CTTG---TCAGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGC 104715 >seq66718 Length=721455 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||||| ||||||||||| || |||||||||||||| || || || |||||| Sbjct 178383 GTAGATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGACTAGTGGA 178442 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||| ||||||| |||||| ||||| Sbjct 178443 AGCAGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 178477 >seq17655 Length=1090806 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 172539 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 172480 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 172479 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAG 172420 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| | ||||| || || | || | ||||| ||| ||| ||||| Sbjct 172419 GCGAAGGCGACGATGCGCTCGGCGAAGCGCTCCCCGC-CGTCGATCCAGCGGAGGGCCCA 172361 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 172360 GTCGGCCTTGCG 172349 >seq35231 Length=668061 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 648680 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCCCAGGTTCGAGACC 648735 >seq66364 Length=958838 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 492698 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 492639 Query 136777 GGGAACAGCTTTTAGATATATTTTTTGTATGTA 136809 |||| || ||||| | ||| ||| |||||| Sbjct 492638 GGGAGCACCTTTTTGTTATTATTTCATTATGTA 492606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588471409536400