Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 118 1e-21
seq16381 102 1e-16
seq59844 98.7 1e-15
seq55038 98.7 1e-15
>seq17655
Length=1090806
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || ||||| || ||||| || || || || |||||| ||||| |||||||| ||
Sbjct 172540 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 172481
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || |||||||| || |||||||||||||| ||||| || ||
Sbjct 172480 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 172421
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|| || || | | |||||||||||||
Sbjct 172420 GGCGAAGGCGACGATGCGCTCGGCGAAG 172393
>seq16381
Length=215813
Score = 102 bits (112), Expect = 1e-16
Identities = 273/409 (67%), Gaps = 10/409 (2%)
Strand=Plus/Plus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
||||| || || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 82226 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 82285
Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 82286 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 82343
Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367
|||| || || |||| || || ||| | || ||| || |||| || ||| | ||
Sbjct 82344 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 82401
Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427
||||| ||||||||||| |||||||| || || || || | ||| | || ||
Sbjct 82402 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 82461
Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487
||| || | ||||| ||||||||||| || || | ||| || || | | ||||
Sbjct 82462 GAGGTCCCTCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGACGCGGC 82521
Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| || |||||| || | || || || | ||| |||||||| || ||||| ||
Sbjct 82522 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCC 82581
Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595
|| || ||| || |||| | |||| ||| | || |||||||| ||
Sbjct 82582 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 82629
>seq59844
Length=164292
Score = 98.7 bits (108), Expect = 1e-15
Identities = 197/289 (68%), Gaps = 16/289 (6%)
Strand=Plus/Minus
Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254
|||||||| || || | ||| | ||| ||| | || ||| | | || || || ||
Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285
Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312
| |||| || || |||||| | |||||||||||||||| |||| || || || |
Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 23227
Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTC 9366
||| || |||| |||||| ||| | |||||| || || | |||| | |
Sbjct 23226 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 23173
Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426
| || |||||||| ||||||| || || || || || ||| || ||| | | |
Sbjct 23172 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGA 23113
Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
||||||| ||||| | ||| || |||||||||||||||||||| ||
Sbjct 23112 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064
>seq55038
Length=538077
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|| |||||||||| |||||| ||||| || ||||| | |||| |||| | || |||
Sbjct 92544 GCAATTGATGCCAGATTGCACACAGCAGTTTCATCGGGACTTGTGAACTCAACTATCTCT 92485
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581
|| |||||||||||| |||||| || |||| ||| | ||| ||||| ||| |||||||
Sbjct 92484 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 92426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589475348699120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |