Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq17655 118 1e-21 seq16381 102 1e-16 seq59844 98.7 1e-15 seq55038 98.7 1e-15 >seq17655 Length=1090806 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 172540 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 172481 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || |||||||||||||| ||||| || || Sbjct 172480 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 172421 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | | ||||||||||||| Sbjct 172420 GGCGAAGGCGACGATGCGCTCGGCGAAG 172393 >seq16381 Length=215813 Score = 102 bits (112), Expect = 1e-16 Identities = 273/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || || ||||| || || ||||| || || | ||| | || |||||| Sbjct 82226 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 82285 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 82286 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 82343 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| || || ||| | || ||| || |||| || ||| | || Sbjct 82344 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 82401 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||| ||||||||||| |||||||| || || || || | ||| | || || Sbjct 82402 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 82461 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||| || | ||||| ||||||||||| || || | ||| || || | | |||| Sbjct 82462 GAGGTCCCTCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGACGCGGC 82521 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || |||||| || | || || || | ||| |||||||| || ||||| || Sbjct 82522 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCC 82581 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||| || |||| | |||| ||| | || |||||||| || Sbjct 82582 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 82629 >seq59844 Length=164292 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/289 (68%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | ||| ||| | || ||| | | || || || || Sbjct 23344 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 23285 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 | |||| || || |||||| | |||||||||||||||| |||| || || || | Sbjct 23284 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 23227 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTC 9366 ||| || |||| |||||| ||| | |||||| || || | |||| | | Sbjct 23226 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 23173 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | || |||||||| ||||||| || || || || || ||| || ||| | | | Sbjct 23172 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGA 23113 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||||| ||||| | ||| || |||||||||||||||||||| || Sbjct 23112 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 23064 >seq55038 Length=538077 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||| |||||| ||||| || ||||| | |||| |||| | || ||| Sbjct 92544 GCAATTGATGCCAGATTGCACACAGCAGTTTCATCGGGACTTGTGAACTCAACTATCTCT 92485 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || |||||||||||| |||||| || |||| ||| | ||| ||||| ||| ||||||| Sbjct 92484 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 92426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589475348699120