Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq55038 82.4 9e-11
>seq55038
Length=538077
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
||| || | ||| || | ||||| || |||||| ||||||| || || | || |
Sbjct 91341 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 91282
Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717
||||||| | | |||| || ||||| | ||| ||||| || | ||| || | |||||
Sbjct 91281 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 91223
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
|||||| ||| |||||||| |||| || | | ||||| | ||| || | || |
Sbjct 91222 ACATATGTTGTGGTCTTTCCACAACCTTCCCACCAACTTTCAGTAAATAAGACCTCTCAA 91163
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
|| ||||||||||| | | ||| ||||| |||||| ||| ||
Sbjct 91162 GCGTCTTAAAACCAAAGAAATCGTAGTCGAAGTCTCTATCATAAATTAT 91114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561627227338320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |