Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq38230 120 2e-21
seq18401 89.7 4e-12
seq15240 89.7 4e-12
seq15106 89.7 4e-12
>seq38230
Length=1340154
Score = 120 bits (132), Expect = 2e-21
Identities = 207/301 (69%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348
||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | |
Sbjct 237688 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 237629
Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408
|||| || ||||| || ||||| || | ||| || || || ||||| |
Sbjct 237628 TGACCAAGATTATCCCAAGGAATACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 237569
Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468
|| | | ||| || ||| ||| ||| | || | ||||||||||| | ||
Sbjct 237568 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 237509
Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528
|| || ||||| ||||||| || | | || || |||||||||||||| ||||
Sbjct 237508 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 237449
Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588
| || || ||||||||||| | || ||||| ||||||||||| ||| || ||| |||
Sbjct 237448 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 237389
Query 552589 C 552589
|
Sbjct 237388 C 237388
>seq18401
Length=486158
Score = 89.7 bits (98), Expect = 4e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || ||||| || || ||||| | || | || || || || ||||||
Sbjct 477663 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 477604
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518
|| ||||||||||||||| |||| | | || ||||||||||| ||||||||||| ||
Sbjct 477603 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 477545
>seq15240
Length=986841
Score = 89.7 bits (98), Expect = 4e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | | ||| || || || || || ||||| || | || || || || || |
Sbjct 684936 ATGCTGTTGTCAGTGTCCCTGCCTACTTCAACGACTCTCAGAGACAGGCCACCAAGGAAG 684877
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| || | ||||| || |||||| | || || ||||| || || |||||||||||
Sbjct 684876 CTGGAGGTTTGGCTGGTCTGAATGTTATGCGCATCATCAACGAGCCAACTGCTGCTGCTA 684817
Query 550518 TTGCATATGGACTTGATAA 550536
|||||||||| ||||| ||
Sbjct 684816 TTGCATATGGTCTTGACAA 684798
>seq15106
Length=2046797
Score = 89.7 bits (98), Expect = 4e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451
|| || | || || || || || ||||| || || ||||| | || || || || || |
Sbjct 824319 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 824378
Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511
| |||||||| || |||||||||||| |||| | | || ||||| ||||| |||||||
Sbjct 824379 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTG 824438
Query 550512 CTGCACTTGCATATGGA 550528
|||| || | ||||||
Sbjct 824439 CTGCTCTGTCTTATGGA 824455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4025671401453620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |