Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq38230 120 2e-21 seq18401 89.7 4e-12 seq15240 89.7 4e-12 seq15106 89.7 4e-12 >seq38230 Length=1340154 Score = 120 bits (132), Expect = 2e-21 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 ||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | | Sbjct 237688 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 237629 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || ||||| || ||||| || | ||| || || || ||||| | Sbjct 237628 TGACCAAGATTATCCCAAGGAATACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 237569 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 || | | ||| || ||| ||| ||| | || | ||||||||||| | || Sbjct 237568 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 237509 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 || || ||||| ||||||| || | | || || |||||||||||||| |||| Sbjct 237508 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 237449 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || ||||||||||| | || ||||| ||||||||||| ||| || ||| ||| Sbjct 237448 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 237389 Query 552589 C 552589 | Sbjct 237388 C 237388 >seq18401 Length=486158 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || | || || || || |||||| Sbjct 477663 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 477604 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 477603 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 477545 >seq15240 Length=986841 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | | ||| || || || || || ||||| || | || || || || || | Sbjct 684936 ATGCTGTTGTCAGTGTCCCTGCCTACTTCAACGACTCTCAGAGACAGGCCACCAAGGAAG 684877 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || | ||||| || |||||| | || || ||||| || || ||||||||||| Sbjct 684876 CTGGAGGTTTGGCTGGTCTGAATGTTATGCGCATCATCAACGAGCCAACTGCTGCTGCTA 684817 Query 550518 TTGCATATGGACTTGATAA 550536 |||||||||| ||||| || Sbjct 684816 TTGCATATGGTCTTGACAA 684798 >seq15106 Length=2046797 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || ||||| | || || || || || | Sbjct 824319 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 824378 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| || |||||||||||| |||| | | || ||||| ||||| ||||||| Sbjct 824379 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTG 824438 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 824439 CTGCTCTGTCTTATGGA 824455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025671401453620