Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq67459 84.2 5e-11 seq57906 84.2 5e-11 seq56574 84.2 5e-11 seq54090 84.2 5e-11 seq53963 84.2 5e-11 seq51578 84.2 5e-11 seq51241 84.2 5e-11 seq47400 84.2 5e-11 seq47332 84.2 5e-11 seq41886 84.2 5e-11 seq40799 84.2 5e-11 seq31309 84.2 5e-11 seq31253 84.2 5e-11 seq27609 84.2 5e-11 seq27367 84.2 5e-11 seq18935 84.2 5e-11 seq18669 84.2 5e-11 seq13842 84.2 5e-11 seq9533 84.2 5e-11 >seq67459 Length=23691 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 1352 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 1408 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 1409 ATTCCCGTCTCCGCA 1423 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 22222 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 22166 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 22165 ATTCCCGTCTCCGCA 22151 >seq57906 Length=39851 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 10319 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 10375 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 10376 ATTCCCGTCTCCGCA 10390 >seq56574 Length=20199 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 11952 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 11896 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 11895 ATTCCCGTCTCCGCA 11881 >seq54090 Length=35493 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 7620 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 7564 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 7563 ATTCCCGTCTCCGCA 7549 >seq53963 Length=25380 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 9094 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 9150 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 9151 ATTCCCGTCTCCGCA 9165 >seq51578 Length=7691 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 2720 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 2664 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 2663 ATTCCCGTCTCCGCA 2649 >seq51241 Length=22806 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 17364 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 17308 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 17307 ATTCCCGTCTCCGCA 17293 >seq47400 Length=50917 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 13860 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 13916 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 13917 ATTCCCGTCTCCGCA 13931 >seq47332 Length=37536 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 35898 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 35842 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 35841 ATTCCCGTCTCCGCA 35827 >seq41886 Length=41712 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 24357 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 24413 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 24414 ATTCCCGTCTCCGCA 24428 >seq40799 Length=7435 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 424 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 480 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 481 ATTCCCGTCTCCGCA 495 >seq31309 Length=10666 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 6231 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 6175 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 6174 ATTCCCGTCTCCGCA 6160 >seq31253 Length=20747 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 15204 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 15148 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 15147 ATTCCCGTCTCCGCA 15133 >seq27609 Length=16448 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 11367 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 11311 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 11310 ATTCCCGTCTCCGCA 11296 >seq27367 Length=17126 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 13423 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 13479 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 13480 ATTCCCGTCTCCGCA 13494 >seq18935 Length=23869 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 2361 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 2417 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 2418 ATTCCCGTCTCCGCA 2432 >seq18669 Length=17634 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 16352 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 16408 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 16409 ATTCCCGTCTCCGCA 16423 >seq13842 Length=41546 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 22839 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 22783 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 22782 ATTCCCGTCTCCGCA 22768 >seq9533 Length=8428 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 1939 GCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCATG---GGTTCG 1995 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 1996 ATTCCCGTCTCCGCA 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146582651379924