Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 275 1e-68
>seq17655
Length=1090806
Score = 275 bits (304), Expect = 1e-68
Identities = 585/865 (68%), Gaps = 29/865 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || || | ||||| |||||||| ||||| |||| || ||||||| |||
Sbjct 172843 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 172784
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956
||| || ||| ||||||| | ||| |||| | | || ||| |||| | |||
Sbjct 172783 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAG-CCCAGCGCCATGAGC 172726
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
||| | || || ||| |||||||||| | ||||||| | ||||||||| | |||
Sbjct 172725 AGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 172666
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
| ||||| || | || |||||| |||| || | |||||| || || |||
Sbjct 172665 GCGCAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATC 172606
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| ||||||||||| | ||| ||||||| || | ||||| | ||||||
Sbjct 172605 TCGAAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCG 172549
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || |||
Sbjct 172548 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 172489
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| ||| | || ||||||||||| || || ||| ||||| |||||||||||||||
Sbjct 172488 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCC 172429
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315
|| || ||||| ||| || | ||| | |||||| | | | | ||||||
Sbjct 172428 TCGACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCA 172373
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371
| || |||||||| ||||| | ||| ||| || || || ||||| ||||
Sbjct 172372 GCGGAGGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGA 172317
Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428
||| | | ||| ||| | |||| | ||||| || ||| | |||||
Sbjct 172316 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 172260
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 172259 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 172200
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
||||||| || | ||| || || ||||| || || || || || || |
Sbjct 172199 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCCAGCACGATGCCGTCGGAGGCGG 172140
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605
| |||||||| || || || | ||| |||||||||| || || ||| | | ||
Sbjct 172139 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCC 172080
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665
|| | |||| | |||||||| || || | |||||||||||||| | || |
Sbjct 172079 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGACGCCACCGCCT 172020
Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690
| ||||| | |||| || | |||
Sbjct 172019 TCTTGTAGAACTCCCAGATCTGCGG 171995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930734732561920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |