Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq17655 233 4e-56 >seq17655 Length=1090806 Score = 233 bits (258), Expect = 4e-56 Identities = 572/857 (67%), Gaps = 27/857 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 172001 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTC 172060 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | || ||||| ||||||| || || || Sbjct 172061 TCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAACGACGAGCGCCACTTCATCTCC 172120 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| ||||| || | || Sbjct 172121 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGG 172180 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 172181 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 172240 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 172241 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 172300 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| ||| ||| | | | ||||| Sbjct 172301 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 172360 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | |||||| || || | |||||| || |||||| | || ||||| Sbjct 172361 TGGGCCCTCCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCTT 172416 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| ||| || || ||| |||||||||||||||||| Sbjct 172417 CGCCTGC-GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAG 172474 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 172475 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 172534 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| |||||| | | | ||| | | || || | | Sbjct 172535 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGACGA 172590 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | | ||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct 172591 GTCCCGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 172650 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | ||||||||||| ||||| |||| Sbjct 172651 CGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTT 172710 Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC--CT 26244 |||||||||| ||||| || | |||||| || || ||| || |||| |||| | Sbjct 172711 CGTGGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCACC 172765 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || ||| Sbjct 172766 AACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAG 172825 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 172826 CGCGTCGGCGAGTACCA 172842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928049035438720