Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 233 4e-56
>seq17655
Length=1090806
Score = 233 bits (258), Expect = 4e-56
Identities = 572/857 (67%), Gaps = 27/857 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||| | ||||||||||| || |||||||||||| ||| | || ||
Sbjct 172001 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTC 172060
Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| ||| | | |||| || | || ||||| ||||||| || || ||
Sbjct 172061 TCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAACGACGAGCGCCACTTCATCTCC 172120
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
||||| | || ||||| || ||||| || || || ||| ||||| || | ||
Sbjct 172121 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGG 172180
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| || |||||| || ||||||| | |||||||| |||||||| ||||||
Sbjct 172181 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 172240
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
|| || | ||||| ||| |||| || ||| | ||| ||||| |||| || |
Sbjct 172241 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 172300
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
|||| || || || || | |||||||| ||| ||| | | | |||||
Sbjct 172301 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 172360
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||| | |||||| || || | |||||| || |||||| | || |||||
Sbjct 172361 TGGGCCCTCCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCTT 172416
Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
|| ||| || ||||||||||| ||| ||| || || ||| ||||||||||||||||||
Sbjct 172417 CGCCTGC-GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAG 172474
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| ||| |||||| || || ||| ||||||||||||||| | | ||||||||
Sbjct 172475 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 172534
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070
|| ||| | || || |||||||| |||||| | | | ||| | | || || | |
Sbjct 172535 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGACGA 172590
Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
| | ||||| | ||| || ||||| ||||| ||||||| ||||||
Sbjct 172591 GTCCCGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 172650
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
| ||||||||| | ||||||||||| ||||| ||||
Sbjct 172651 CGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTT 172710
Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC--CT 26244
|||||||||| ||||| || | |||||| || || ||| || |||| |||| |
Sbjct 172711 CGTGGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCACC 172765
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
||||||||||||| ||||| ||| ||| || | || |||||||||||||| || |||
Sbjct 172766 AACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAG 172825
Query 26305 AGGGTCGGCGACTATCA 26321
| |||||||| || ||
Sbjct 172826 CGCGTCGGCGAGTACCA 172842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928049035438720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |