Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq16495 86.0 5e-12
seq54907 82.4 6e-11
>seq16495
Length=532983
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/209 (69%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || ||||| || || || ||||| ||| ||| |||| |||||
Sbjct 85663 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTGGAAGTGGAATCTTCA 85722
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | | ||| || ||| ||||| ||||| | ||| || ||
Sbjct 85723 GACACCATCGAC-ACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 85781
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| | || |||||||| || || || | || ||| | ||| |||| |||||||||
Sbjct 85782 CAACGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACTCTGGCTGATTATAAC 85841
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||| || || ||||| || ||| ||||
Sbjct 85842 ATTCAGAAGGAGTCTACCCTCCACCTGGT 85870
>seq54907
Length=1337563
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
||||| |||||| | || |||||| ||||| ||||||||||| || || || ||||
Sbjct 281390 GACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAG 281331
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756
||| || |||| ||||||||||| ||||||||||| ||||| ||
Sbjct 281330 GATGGGCGTACCTTGGCAGATTATAACATCCAAAAAGAATCCACTCTTCA 281281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425049456445902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |