Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq16495 86.0 5e-12 seq54907 82.4 6e-11 >seq16495 Length=532983 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || ||||| ||| ||| |||| ||||| Sbjct 85663 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTGGAAGTGGAATCTTCA 85722 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || ||| ||||| ||||| | ||| || || Sbjct 85723 GACACCATCGAC-ACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 85781 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || |||||||| || || || | || ||| | ||| |||| ||||||||| Sbjct 85782 CAACGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACTCTGGCTGATTATAAC 85841 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || ||||| || ||| |||| Sbjct 85842 ATTCAGAAGGAGTCTACCCTCCACCTGGT 85870 >seq54907 Length=1337563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| |||||| | || |||||| ||||| ||||||||||| || || || |||| Sbjct 281390 GACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAG 281331 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| || |||| ||||||||||| ||||||||||| ||||| || Sbjct 281330 GATGGGCGTACCTTGGCAGATTATAACATCCAAAAAGAATCCACTCTTCA 281281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425049456445902