Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq37111 107 1e-17 seq38230 105 4e-17 seq35556 91.5 1e-12 seq14904 91.5 1e-12 seq58782 89.7 3e-12 seq54868 89.7 3e-12 seq35625 87.8 1e-11 seq35365 87.8 1e-11 seq17562 87.8 1e-11 seq16495 87.8 1e-11 seq59851 86.0 4e-11 seq37240 86.0 4e-11 >seq37111 Length=151593 Score = 107 bits (118), Expect = 1e-17 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705 || || |||||| | ||| |||||||||| ||||| | ||| ||| | | ||| Sbjct 24661 AAGCAGTTTTCAGCTGAAGAAATTTCTTCCATGGTCCTCATCAAGATGCGTGAGATCGCC 24602 Query 474706 GAGCTCATATCTTGGAC-AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764 ||| | || || ||| || | ||| |||| || | || || || || || || | Sbjct 24601 GAGG-CTTACCTAGGAGTAACTATTAAGA-ATGCTGTTGTCACCGTGCCTGCTTACTTCA 24544 Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824 ||||||| || | || ||||| || ||||| || ||||| ||||||||||| | | Sbjct 24543 ATGATTCCCAGAGGCAGGCAACCAAGGATGCCGGTGTTATTGCTGGTCTTAATGTGATGC 24484 Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| || || || ||||||||||| ||| |||| ||||||||||| ||||| Sbjct 24483 GTATCATCAACGAGCCAACAGCAGCTGCAATTGCCTATGGTCTTGACAAGAA 24432 >seq38230 Length=1340154 Score = 105 bits (116), Expect = 4e-17 Identities = 204/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 ||||||| ||| |||| || || ||||| || | ||| | || ||| | || ||| | | Sbjct 237688 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 237629 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991 |||| || |||| || ||||| | |||| | || ||| | || ||||| | Sbjct 237628 TGACCAAGATTATCCCAAGGAATACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 237569 Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051 | | ||||| || || | ||| || | | | |||| |||||| | || Sbjct 237568 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 237509 Query 476052 CTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAG 476111 || || ||||| ||||| | || | ||||| || |||||||||||||| | | Sbjct 237508 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 237449 Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTG 476171 | ||||| ||||||||||| | |||||||||||||| ||||| ||||| |||| ||| Sbjct 237448 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 237389 Query 476172 C 476172 | Sbjct 237388 C 237388 >seq35556 Length=170707 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| |||||||| || || ||||| || || | |||||| || ||||| || | | Sbjct 70088 TTACCGTTCCAGCGTACTTCAATGACTCGCAGAGAACAGCAACAAAGGATGCTGGCCGTA 70147 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||| || | ||| | || ||||| ||||| ||||| || || | |||||||||| Sbjct 70148 TTGCAGGGCTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCTCTTGCTTATG 70207 Query 474864 GTCTTGATAAGAA 474876 || |||| ||||| Sbjct 70208 GTTTTGAGAAGAA 70220 >seq14904 Length=321791 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| | ||| || ||||| || || || || | ||| |||||||| || || Sbjct 31159 CGAAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGTGTC 31100 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || || || |||||||| || ||||| || || || || || || || Sbjct 31099 CGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCC 31040 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || |||||| |||||| ||||| || |||| | ||||| Sbjct 31039 TCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCGACCTCAAGT 30980 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||||||||| || || || || Sbjct 30979 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTG 30942 >seq58782 Length=1261902 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || ||||| || ||||| || || | || || || || |||| Sbjct 1004854 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 1004913 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | ||||| | ||||| || ||||| |||||||| || || Sbjct 1004914 CTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAATGAGCCAACAGCTGCTGCCA 1004973 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 1004974 TTGCTTATGGTCTTGACAAGAA 1004995 >seq54868 Length=1506235 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || || || || ||||| || || | || || || || |||| Sbjct 506013 ATGCTGTGGTCACTGTCCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 505954 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| |||||||| || |||||| | || || || || || ||||| || || || Sbjct 505953 CTGGAGTGATTGCAGGCCTAAATGTTATGCGCATCATCAACGAGCCAACCGCTGCTGCTA 505894 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 505893 TTGCTTATGGTCTTGACAAGAA 505872 >seq35625 Length=32593 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||||||||| || || || | || ||||| || || || Sbjct 21590 ACGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGT 21531 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| |||||||| ||||| || || || || || ||||| || Sbjct 21530 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGGGGAATGCC 21471 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| || || || |||| || | | |||| Sbjct 21470 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCA-CCTCAA 21412 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| ||||| || || Sbjct 21411 GAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 21372 >seq35365 Length=683187 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || ||||| || || || || || || || || || || Sbjct 660014 ACGGAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGGGT 660073 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || || ||||| ||||| || || || || || || || || ||||| || Sbjct 660074 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCC 660133 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||||| ||||| ||||| || || || || | | | | || |||| Sbjct 660134 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAA-CCTCAA 660192 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || |||||||| ||||| |||||||| || Sbjct 660193 GGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTG 660232 >seq17562 Length=36101 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | | ||| || || ||||| |||||||| || || || || Sbjct 5987 TTGTAGTCAGCCAGGGTGCGGCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGC 5928 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || ||||| ||||| |||||||| || ||||| |||||| | || || ||| Sbjct 5927 TGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTTGATCGTGTCA 5868 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | ||||||| || || || |||||||||||||| ||||| || || Sbjct 5867 GACGACTCGACCT-CAAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTG 5812 >seq16495 Length=532983 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || || || || ||| || || || ||||||||||| ||||| Sbjct 85883 ACGAAGGCGAAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGT 85824 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| ||||| |||||||| || || ||||| || || || ||||| || Sbjct 85823 GCGACCATCCTCAAGCTGCTTACCAGCAAAGATCAGGCGTTGCTGGTCCGGGGGAATGCC 85764 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| || ||||| Sbjct 85763 CTCCTTGTCCTGGATCTT 85746 >seq59851 Length=371957 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || ||||| || ||||| || || | || || || || |||| Sbjct 243854 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 243913 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | ||||| | ||||| || || || |||||||| || || Sbjct 243914 CTGGTGTCATTGCTGGCATCAATGTCCTTCGTATCATCAACGAGCCAACAGCTGCTGCCA 243973 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 243974 TTGCTTATGGTCTTGACAAGAA 243995 >seq37240 Length=85469 Score = 86.0 bits (94), Expect = 4e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | || ||| |||| |||| ||||| |||||| | |||| Sbjct 16871 TCAATGTTATATGGAGTGACAGTTTCTGGGTATGTCAGATTCAAAGCAATACTCCATGGC 16930 Query 321804 AAACCAACTTCATTCAGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | || || || || ||||| ||||| | |||||| || |||||| | || | Sbjct 16931 ACCCCCAATTGAT-CAATGTTGATATTCGGATCTGGTGTGATGACGGTACGAGCTGAGAA 16989 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 16990 ATCAACACGCTTCCCCATTAAATTTCCTCTAATCCGGCCTTCTTTT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265239272633624