Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq37111 107 1e-17
seq38230 105 4e-17
seq35556 91.5 1e-12
seq14904 91.5 1e-12
seq58782 89.7 3e-12
seq54868 89.7 3e-12
seq35625 87.8 1e-11
seq35365 87.8 1e-11
seq17562 87.8 1e-11
seq16495 87.8 1e-11
seq59851 86.0 4e-11
seq37240 86.0 4e-11
>seq37111
Length=151593
Score = 107 bits (118), Expect = 1e-17
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705
|| || |||||| | ||| |||||||||| ||||| | ||| ||| | | |||
Sbjct 24661 AAGCAGTTTTCAGCTGAAGAAATTTCTTCCATGGTCCTCATCAAGATGCGTGAGATCGCC 24602
Query 474706 GAGCTCATATCTTGGAC-AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764
||| | || || ||| || | ||| |||| || | || || || || || || |
Sbjct 24601 GAGG-CTTACCTAGGAGTAACTATTAAGA-ATGCTGTTGTCACCGTGCCTGCTTACTTCA 24544
Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824
||||||| || | || ||||| || ||||| || ||||| ||||||||||| | |
Sbjct 24543 ATGATTCCCAGAGGCAGGCAACCAAGGATGCCGGTGTTATTGCTGGTCTTAATGTGATGC 24484
Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|||| || || || ||||||||||| ||| |||| ||||||||||| |||||
Sbjct 24483 GTATCATCAACGAGCCAACAGCAGCTGCAATTGCCTATGGTCTTGACAAGAA 24432
>seq38230
Length=1340154
Score = 105 bits (116), Expect = 4e-17
Identities = 204/301 (68%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931
||||||| ||| |||| || || ||||| || | ||| | || ||| | || ||| | |
Sbjct 237688 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 237629
Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991
|||| || |||| || ||||| | |||| | || ||| | || ||||| |
Sbjct 237628 TGACCAAGATTATCCCAAGGAATACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 237569
Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051
| | ||||| || || | ||| || | | | |||| |||||| | ||
Sbjct 237568 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 237509
Query 476052 CTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAG 476111
|| || ||||| ||||| | || | ||||| || |||||||||||||| | |
Sbjct 237508 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 237449
Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTG 476171
| ||||| ||||||||||| | |||||||||||||| ||||| ||||| |||| |||
Sbjct 237448 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 237389
Query 476172 C 476172
|
Sbjct 237388 C 237388
>seq35556
Length=170707
Score = 91.5 bits (100), Expect = 1e-12
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
|||| |||||||| || || ||||| || || | |||||| || ||||| || | |
Sbjct 70088 TTACCGTTCCAGCGTACTTCAATGACTCGCAGAGAACAGCAACAAAGGATGCTGGCCGTA 70147
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
||||||| || | ||| | || ||||| ||||| ||||| || || | ||||||||||
Sbjct 70148 TTGCAGGGCTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCTCTTGCTTATG 70207
Query 474864 GTCTTGATAAGAA 474876
|| |||| |||||
Sbjct 70208 GTTTTGAGAAGAA 70220
>seq14904
Length=321791
Score = 91.5 bits (100), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
||||| | ||| || ||||| || || || || | ||| |||||||| || ||
Sbjct 31159 CGAAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGTGTC 31100
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | ||| || || || || |||||||| || ||||| || || || || || || ||
Sbjct 31099 CGGCCATCCTCGAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCC 31040
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || |||||| |||||| ||||| || |||| | |||||
Sbjct 31039 TCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCGACCTCAAGT 30980
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || |||||||||||||| || || || ||
Sbjct 30979 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTG 30942
>seq58782
Length=1261902
Score = 89.7 bits (98), Expect = 3e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | ||||| || ||||| || ||||| || || | || || || || ||||
Sbjct 1004854 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 1004913
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||||| || | ||||| | ||||| || ||||| |||||||| || ||
Sbjct 1004914 CTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAATGAGCCAACAGCTGCTGCCA 1004973
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||||||||| |||||
Sbjct 1004974 TTGCTTATGGTCTTGACAAGAA 1004995
>seq54868
Length=1506235
Score = 89.7 bits (98), Expect = 3e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | ||||| || || || || ||||| || || | || || || || ||||
Sbjct 506013 ATGCTGTGGTCACTGTCCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 505954
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| ||| |||||||| || |||||| | || || || || || ||||| || || ||
Sbjct 505953 CTGGAGTGATTGCAGGCCTAAATGTTATGCGCATCATCAACGAGCCAACCGCTGCTGCTA 505894
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||||||||| |||||
Sbjct 505893 TTGCTTATGGTCTTGACAAGAA 505872
>seq35625
Length=32593
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || ||||||||||| || || || | || ||||| || || ||
Sbjct 21590 ACGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGT 21531
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| || || ||||| |||||||| ||||| || || || || || ||||| ||
Sbjct 21530 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGGGGAATGCC 21471
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| ||||| || || || |||| || | | ||||
Sbjct 21470 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCA-CCTCAA 21412
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || || ||||| ||||| ||||| || ||
Sbjct 21411 GAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 21372
>seq35365
Length=683187
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| || || ||||| || || || || || || || || || ||
Sbjct 660014 ACGGAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGGGT 660073
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | || || || ||||| ||||| || || || || || || || || ||||| ||
Sbjct 660074 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCC 660133
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729
||||||||||| ||||| ||||| || || || || | | | | || ||||
Sbjct 660134 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAA-CCTCAA 660192
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || || || |||||||| ||||| |||||||| ||
Sbjct 660193 GGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTG 660232
>seq17562
Length=36101
Score = 87.8 bits (96), Expect = 1e-11
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| || ||||| || || | | ||| || || ||||| |||||||| || || || ||
Sbjct 5987 TTGTAGTCAGCCAGGGTGCGGCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGC 5928
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| || ||||| ||||| |||||||| || ||||| |||||| | || || |||
Sbjct 5927 TGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTTGATCGTGTCA 5868
Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | | | ||||||| || || || |||||||||||||| ||||| || ||
Sbjct 5867 GACGACTCGACCT-CAAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTG 5812
>seq16495
Length=532983
Score = 87.8 bits (96), Expect = 1e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| || || || || || || ||| || || || ||||||||||| |||||
Sbjct 85883 ACGAAGGCGAAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGT 85824
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| ||||| ||||| |||||||| || || ||||| || || || ||||| ||
Sbjct 85823 GCGACCATCCTCAAGCTGCTTACCAGCAAAGATCAGGCGTTGCTGGTCCGGGGGAATGCC 85764
Query 480671 TTCCTTGTCTTGAATCTT 480688
|||||||| || |||||
Sbjct 85763 CTCCTTGTCCTGGATCTT 85746
>seq59851
Length=371957
Score = 86.0 bits (94), Expect = 4e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | ||||| || ||||| || ||||| || || | || || || || ||||
Sbjct 243854 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 243913
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||||| || | ||||| | ||||| || || || |||||||| || ||
Sbjct 243914 CTGGTGTCATTGCTGGCATCAATGTCCTTCGTATCATCAACGAGCCAACAGCTGCTGCCA 243973
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||||||||| |||||
Sbjct 243974 TTGCTTATGGTCTTGACAAGAA 243995
>seq37240
Length=85469
Score = 86.0 bits (94), Expect = 4e-11
Identities = 120/166 (72%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803
||||| |||| | || ||| |||| |||| ||||| |||||| | ||||
Sbjct 16871 TCAATGTTATATGGAGTGACAGTTTCTGGGTATGTCAGATTCAAAGCAATACTCCATGGC 16930
Query 321804 AAACCAACTTCATTCAGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862
| || | || || || || ||||| ||||| | |||||| || |||||| | || |
Sbjct 16931 ACCCCCAATTGAT-CAATGTTGATATTCGGATCTGGTGTGATGACGGTACGAGCTGAGAA 16989
Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908
||||||||| || ||||| | |||||||||||| || |||||||||
Sbjct 16990 ATCAACACGCTTCCCCATTAAATTTCCTCTAATCCGGCCTTCTTTT 17035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3265239272633624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |