Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17655 118 1e-21 seq16381 100 3e-16 seq59844 96.9 4e-15 seq55079 93.3 5e-14 seq66718 89.7 6e-13 >seq17655 Length=1090806 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||| | | || || || || || ||||| |||||||||||||| || || Sbjct 172393 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 172452 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 172453 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 172512 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 172513 GCTCATCTCCCGCGACGAGGGCCTGCAC 172540 >seq16381 Length=215813 Score = 100 bits (110), Expect = 3e-16 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| ||| ||| |||| || ||| || || || ||||| || Sbjct 82629 GGGGCCAAGATCCCCAAGGGCTGCCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACGCTG 82570 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| ||| |||| || || | || || ||| || ||| | || | | Sbjct 82569 CTCGCCCGGGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAG 82510 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || |||||||| || ||||| | || ||||| || | ||| Sbjct 82509 TTCGTCGAGCTCTTCGTCGGTGTGGGCGCGTCCAGGGTGAGGGACCTCTTCGAGAAGGCC 82450 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||| ||||||||||| || || || | ||| || Sbjct 82449 AAGGCCAAGGCGCCCTGCATCGTCTTCATCGATGAGATTGACGCCGTCGGGAGGCAGCGT 82390 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || ||| || | || |||||||| || || || ||||| || || |||| Sbjct 82389 GGTGCCGGAATGG-GTG-GGGGGAACGACGAGAGGGAGCAGACCATTAACCAGCTGCTCA 82332 Query 175574 CCGAGATGGATGGCTT 175589 | |||||||| ||||| Sbjct 82331 CGGAGATGGACGGCTT 82316 >seq59844 Length=164292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||||||||| |||||| | ||||| |||||||| | | ||| Sbjct 23064 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 23123 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 23124 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 23183 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | |||||| | || || || || || || || | ||||| ||| Sbjct 23184 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTCAATCAGCTA 23237 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || ||||||||||| ||||| | |||||||| | ||| |||| ||||| || Sbjct 23238 CTGACTGAGATGGATGGTTTTGAGGGAAACACTGGCATCATTGTTGTTGCTGCCACCAAC 23297 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | | || || | ||| ||| | ||| | || || || ||||| Sbjct 23298 AGGGCTGACATTTTGGATTCCGCTTTACTTAGACCTGGACGCTTTGA 23344 >seq55079 Length=1765451 Score = 93.3 bits (102), Expect = 5e-14 Identities = 222/334 (66%), Gaps = 14/334 (4%) Strand=Plus/Plus Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644 |||| | || ||||| ||||| || |||| || || || || ||||||||||||||||| Sbjct 1457929 CTCCTCGGTGGCGACGACATAGTCGTCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGC 1457988 Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAG 177704 || || |||||| ||| |||||||| ||||| ||| |||||| ||||| | Sbjct 1457989 CTCCACGTAGTCCCCGGCGAAGCCCCAGTCCCTGGCGGCGGAGAGGTTGCCGAG---GAA 1458045 Query 177705 GAACT--CTCT-----CTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTG 177757 || || ||| | |||||| || | || | | || ||||| | Sbjct 1458046 GACCTTGGTCTGGAGCCCCACCTT----GATGCGGCCGATGGCGCGGGTGATCTTGCGGG 1458101 Query 177758 TGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCAT 177817 |||| |||| | || || | || || |||||||||||||| | ||| |||||| Sbjct 1458102 TGACGAAGTTCTCGCCGCGCCGGGGGGACTCGTGGTTGAAGAGCACGCCGTTGCAGGCGA 1458161 Query 177818 ACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGC 177877 | | || || | || ||||| || | | |||||| ||||| | |||| | || Sbjct 1458162 AGAGGCCGTACGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCGGCGACCTTGGCGGCGG 1458221 Query 177878 CATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 | ||| ||| || |||| |||||| || |||| Sbjct 1458222 CGTAGGGGGAGCGCGGGTGGAAGGGCGTGGCCTC 1458255 >seq66718 Length=721455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 75188 |||||| |||| || |||||||| |||| || || |||| | ||| || | || Sbjct 181030 GGGACTTCGATTATGACTACTTTGGCTTCAAGACTCTGGAGAGGTCCTACCTCCTGAAGC 180971 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 | | ||| | || |||| | || ||| ||||||| ||| |||| || | || || | Sbjct 180970 TTGGTGGAGTTGTCGTGGAGAGGCCGCAGCACATGTTAATGAGGGTTTCAGTAGGGATAC 180911 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| |||||||| |||| | | || ||| | |||||||| | ||| | Sbjct 180910 ACAAGGATGACATTGACTCTGCCATCAGAACGTACCATCTCATGTCCCAGCGCTGGTTTA 180851 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| || | |||||||| ||||||||||| || || ||||| ||| Sbjct 180850 CTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCGAGACCTCAG 180804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596058503909440