Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 118 1e-21
seq16381 100 3e-16
seq59844 96.9 4e-15
seq55079 93.3 5e-14
seq66718 89.7 6e-13
>seq17655
Length=1090806
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129
||||||||||||| | | || || || || || ||||| |||||||||||||| || ||
Sbjct 172393 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 172452
Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
|||||| || | ||| | |||||||| || |||||||| ||||| |||||| || ||
Sbjct 172453 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 172512
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|| || ||||| || ||||| || |||
Sbjct 172513 GCTCATCTCCCGCGACGAGGGCCTGCAC 172540
>seq16381
Length=215813
Score = 100 bits (110), Expect = 3e-16
Identities = 214/316 (68%), Gaps = 4/316 (1%)
Strand=Plus/Minus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|| |||||||||||| ||| ||| |||| || ||| || || || ||||| ||
Sbjct 82629 GGGGCCAAGATCCCCAAGGGCTGCCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACGCTG 82570
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395
|||||||| ||| |||| || || | || || ||| || ||| | || | |
Sbjct 82569 CTCGCCCGGGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAG 82510
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
|| || ||| | || || |||||||| || ||||| | || ||||| || | |||
Sbjct 82509 TTCGTCGAGCTCTTCGTCGGTGTGGGCGCGTCCAGGGTGAGGGACCTCTTCGAGAAGGCC 82450
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515
| || || || || |||||||| ||||||||||| || || || | ||| ||
Sbjct 82449 AAGGCCAAGGCGCCCTGCATCGTCTTCATCGATGAGATTGACGCCGTCGGGAGGCAGCGT 82390
Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573
| || || ||| || | || |||||||| || || || ||||| || || ||||
Sbjct 82389 GGTGCCGGAATGG-GTG-GGGGGAACGACGAGAGGGAGCAGACCATTAACCAGCTGCTCA 82332
Query 175574 CCGAGATGGATGGCTT 175589
| |||||||| |||||
Sbjct 82331 CGGAGATGGACGGCTT 82316
>seq59844
Length=164292
Score = 96.9 bits (106), Expect = 4e-15
Identities = 194/287 (68%), Gaps = 12/287 (4%)
Strand=Plus/Plus
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
|| |||||||||||||||||||| |||||| | ||||| |||||||| | | |||
Sbjct 23064 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 23123
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514
|| ||| || || || || || ||||||| |||||||| || || | |||| |
Sbjct 23124 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 23183
Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569
||| | |||||| | || || || || || || || | ||||| |||
Sbjct 23184 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTCAATCAGCTA 23237
Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629
|| || ||||||||||| ||||| | |||||||| | ||| |||| ||||| ||
Sbjct 23238 CTGACTGAGATGGATGGTTTTGAGGGAAACACTGGCATCATTGTTGTTGCTGCCACCAAC 23297
Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676
| | || || | ||| ||| | ||| | || || || |||||
Sbjct 23298 AGGGCTGACATTTTGGATTCCGCTTTACTTAGACCTGGACGCTTTGA 23344
>seq55079
Length=1765451
Score = 93.3 bits (102), Expect = 5e-14
Identities = 222/334 (66%), Gaps = 14/334 (4%)
Strand=Plus/Plus
Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644
|||| | || ||||| ||||| || |||| || || || || |||||||||||||||||
Sbjct 1457929 CTCCTCGGTGGCGACGACATAGTCGTCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGC 1457988
Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAG 177704
|| || |||||| ||| |||||||| ||||| ||| |||||| ||||| |
Sbjct 1457989 CTCCACGTAGTCCCCGGCGAAGCCCCAGTCCCTGGCGGCGGAGAGGTTGCCGAG---GAA 1458045
Query 177705 GAACT--CTCT-----CTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTG 177757
|| || ||| | |||||| || | || | | || ||||| |
Sbjct 1458046 GACCTTGGTCTGGAGCCCCACCTT----GATGCGGCCGATGGCGCGGGTGATCTTGCGGG 1458101
Query 177758 TGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCAT 177817
|||| |||| | || || | || || |||||||||||||| | ||| ||||||
Sbjct 1458102 TGACGAAGTTCTCGCCGCGCCGGGGGGACTCGTGGTTGAAGAGCACGCCGTTGCAGGCGA 1458161
Query 177818 ACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGC 177877
| | || || | || ||||| || | | |||||| ||||| | |||| | ||
Sbjct 1458162 AGAGGCCGTACGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCGGCGACCTTGGCGGCGG 1458221
Query 177878 CATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911
| ||| ||| || |||| |||||| || ||||
Sbjct 1458222 CGTAGGGGGAGCGCGGGTGGAAGGGCGTGGCCTC 1458255
>seq66718
Length=721455
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 75188
|||||| |||| || |||||||| |||| || || |||| | ||| || | ||
Sbjct 181030 GGGACTTCGATTATGACTACTTTGGCTTCAAGACTCTGGAGAGGTCCTACCTCCTGAAGC 180971
Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248
| | ||| | || |||| | || ||| ||||||| ||| |||| || | || || |
Sbjct 180970 TTGGTGGAGTTGTCGTGGAGAGGCCGCAGCACATGTTAATGAGGGTTTCAGTAGGGATAC 180911
Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308
|| ||| |||||||| |||| | | || ||| | |||||||| | ||| |
Sbjct 180910 ACAAGGATGACATTGACTCTGCCATCAGAACGTACCATCTCATGTCCCAGCGCTGGTTTA 180851
Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355
||| || | |||||||| ||||||||||| || || ||||| |||
Sbjct 180850 CTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCGAGACCTCAG 180804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596058503909440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |