Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq54907 104 4e-17 seq16495 93.3 8e-14 >seq54907 Length=1337563 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| | || || ||||| || | |||| ||| || |||||| || || | Sbjct 281714 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 281773 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || ||| || | || ||||||||||| || | ||||| || ||||| | Sbjct 281774 AAAGTGTGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCAGG 281833 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| ||||| || || |||| || | ||| ||| || ||||| ||| ||| Sbjct 281834 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 281893 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || |||||||| || |||||||| ||||| Sbjct 281894 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 281940 >seq16495 Length=532983 Score = 93.3 bits (102), Expect = 8e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||||||||| ||||| || | |||||| ||| || || || | | || | | Sbjct 266826 CGAAGTACCAGGTGCAACGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGTCCA 266767 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 | || || || || || ||||| || | | ||| || || || |||| || || ||| Sbjct 266766 CCCTCAAACTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGTAGTATGCCCTCCTTA 266707 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||| || |||||||||||||| || ||||| || Sbjct 266706 TCGTGGATCTTCGCTTTGACATTGTCAATTGTGTCGGAAGACTCAACCTCGAGAGTGATG 266647 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || || || || || || ||||| || ||| || || Sbjct 266646 GTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCTTTGTA 266608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898883643584160