Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq54907 104 4e-17
seq16495 93.3 8e-14
>seq54907
Length=1337563
Score = 104 bits (114), Expect = 4e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
||||||| | || || ||||| || | |||| ||| || |||||| || || |
Sbjct 281714 CCACCTCGGAGGCGTAGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCC 281773
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
|| || ||| || | || ||||||||||| || | ||||| || ||||| |
Sbjct 281774 AAAGTGTGCCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCAGG 281833
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| ||||| ||||| || || |||| || | ||| ||| || ||||| ||| |||
Sbjct 281834 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACT 281893
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || || || || |||||||| || |||||||| |||||
Sbjct 281894 TCAAGAGTGATGGTCTTTCCAGTTAGCGTCTTGACAAATATCTGCAT 281940
>seq16495
Length=532983
Score = 93.3 bits (102), Expect = 8e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||||||||| ||||| || | |||||| ||| || || || | | || | |
Sbjct 266826 CGAAGTACCAGGTGCAACGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGTCCA 266767
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
| || || || || || ||||| || | | ||| || || || |||| || || |||
Sbjct 266766 CCCTCAAACTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGTAGTATGCCCTCCTTA 266707
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || || | ||| | ||| ||| || |||||||||||||| || ||||| ||
Sbjct 266706 TCGTGGATCTTCGCTTTGACATTGTCAATTGTGTCGGAAGACTCAACCTCGAGAGTGATG 266647
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364
|| || || || || || || ||||| || ||| || ||
Sbjct 266646 GTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCTTTGTA 266608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898883643584160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |